File: alignScore.t

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blasr 5.3.5%2Bdfsg-7
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Set up
  $ mkdir -p $OUTDIR

Test alignment score
  $ rm -rf $OUTDIR/testscore.m0
  $ $BLASR_EXE $DATDIR/read.fasta  $DATDIR/ref.fasta --minReadLength 1 -m 0 --out $OUTDIR/testscore.m0
  [INFO]* (glob)
  [INFO]* (glob)
  $ diff $OUTDIR/testscore.m0 $STDDIR/testscore.m0