1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
|
#!/bin/csh
# codehop.csh <blocks> <out>
#
# Make codehops from a set of blocks
#
unalias rm
unalias mv
#echo "codehop.csh"
#echo $1
#echo $2
#echo $3
#
#
setenv BLIMPS_DIR ../..
set bin = $BLIMPS_DIR/bin
# See coduse.csh to create the codon usage files
set docs = $BLIMPS_DIR/docs
#
# Type "$bin/codehop" to see parameter options
if ( -e $1 ) then
# These are the WWW defaults
# $bin/codehop $1 -O3 >& $2
# Use an alternative codon usage file
$bin/codehop $1 -C$docs/arab.codon.use -O3 >& $2
# Use most common codons (many people prefer this option)
# $bin/codehop $1 -O3 -M >& $2
#
else
echo "Cannot open blocks file $1."
endif
#
set files = (distribution/*.*)
foreach file ($files)
set test = $file:t
echo "Checking $test..."
diff $test $file
echo ""
end
exit(0)
|
