File: euk.blks

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blimps 3.9%2Bds-4
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file content (91 lines) | stat: -rw-r--r-- 4,954 bytes parent folder | download | duplicates (3)
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ID   Methylases Eukaryotes; BLOCK
AC   MethylaA; distance from previous block=(227,1136)
DE   MTCH_ARATH Chromomethylase Arabidopsis coding, tra... family
BL   GWP motif=[8,0,17] motomat=[1,1,-10] width=29 seqs=8
MTCH_ARAAR ( 221) LDLYSGCGAMSTGFCMGASIAGVKLITKW  94
MTCH_ARATH ( 229) LDLYSGCGAMSTGFCMGASISGVKLITKW  94
MTDM_ARATH (1092) LDIFAGCGGLSHGLKKAGVSDAKWAIEYE 100
MTDM_CHICK (1057) LDVFSGCGGLSEGFHQAGVSETLWAIEMW  52
MTDM_HUMAN (1021) LDVFSGCGGLSEGFHQAGISDTLWAIEMW  52
MTDM_MOUSE (1027) LDVFSGCGGLSEGFHQAGISETLWAIEMW  50
MTDM_PARLI (1134) LDVFAGCGGLSEGFHQAGICESSWAIEKE  69
MTDM_XENLA (1017) LDVFSGCGGLSEGFHQAGISETNWAIEMW  53
//
ID   Methylases Eukaryotes; BLOCK
AC   MethylaB; distance from previous block=(227,1136)
DE   MTCH_ARATH Chromomethylase Arabidopsis coding, tra... family
BL   GWP motif=[8,0,17] motomat=[1,1,-10] width=29 seqs=8
MTCH_ARAAR ( 254) KFACDSFRHNHPETEVRNEAAEDFLILLK  97
MTCH_ARATH ( 262) KFACDSLKLNHPETEVRNEAAEDFLALLK 100
MTDM_ARATH (1125) EPAGQAFKQNHPESTVFVDNCNVILRAIM  97
MTDM_CHICK (1086) EPAAQAFRLNNPGTTVFTEDCNVLLKLVM  48
MTDM_HUMAN (1050) DPAAQAFRLNNPGSTVFTEDCNILLKLVM  52
MTDM_MOUSE (1056) DPAAQAFRLNNPGTTVFTEDCNVLLKLVM  50
MTDM_PARLI (1163) EPAAQAYRLNNPGSTVFSDDCNELLRLVM  66
MTDM_XENLA (1046) EPAAQAFRLNNPGTTVFTEDCNILLKLVM  49
//
ID   Methylases Eukaryotes; BLOCK
AC   MethylaC; distance from previous block=(11,111)
DE   MTCH_ARATH Chromomethylase Arabidopsis coding, tra... family
BL   CSR motif=[8,0,17] motomat=[1,1,-10] width=26 seqs=8
MTCH_ARAAR ( 394) LPLPGTVYSVCGGPPCQGISGYNRFR  90
MTCH_ARATH ( 402) LPLPGTVYTVCGGPPCQGISGYNRYR 100
MTDM_ARATH (1183) LPLPGQVDFINGGPPCQGFSGMNRFN 100
MTDM_CHICK (1126) LPQKGDVEMLCGGPPCQGFSGMNRFN  64
MTDM_HUMAN (1090) LPQKGDVEMLCGGPPCQGFSGMNRFN  64
MTDM_MOUSE (1096) LPQKGDVEMLCGGPPCQGFSGMNRFN  64
MTDM_PARLI (1203) LPQKGDVELLCGGPPCQGFSGMNRFN  68
MTDM_XENLA (1086) LPQKGDVEMLCGGPPCQGFSGMNRFN  64
//
ID   Methylases Eukaryotes; BLOCK
AC   MethylaD; distance from previous block=(49,51)
DE   MTCH_ARATH Chromomethylase Arabidopsis coding, tra... family
BL   AAH motif=[8,0,17] motomat=[1,1,-10] width=48 seqs=8
MTCH_ARAAR ( 471) SFVAMNYQTRLGMMTAGSYGLPQVRNRVFLWAAQPTEKLPPYPLPTHE  94
MTCH_ARATH ( 479) SFVAMNYQTRLGMMAAGSYGLPQLRNRVFLWAAQPSEKLPPYPLPTHE  94
MTDM_ARATH (1258) SLLEMGYQVRFGILEAGAYGVSQSRKRAFIWAAAPEEVLPEWPEPMHV 100
MTDM_CHICK (1201) CLVRMGYQCTFGVLQAGQYGVAQTRRRAIVLAAAPGEKLPMFPEPLHV  58
MTDM_HUMAN (1165) CLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHV  57
MTDM_MOUSE (1171) CLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHV  57
MTDM_PARLI (1278) CLIRMGYQCTFGILQAGQYGVPQTRRRAIILAAAPGEKLPFYPEPLHV  63
MTDM_XENLA (1161) CLVRMGYQCTFGVLQAGQYGVAQTRRRAIVLAAAPGEKLPMFPEPLHV  58
//
ID   Methylases Eukaryotes; BLOCK
AC   MethylaE; distance from previous block=(26,28)
DE   MTCH_ARATH Chromomethylase Arabidopsis coding, tra... family
BL   DDN motif=[8,0,17] motomat=[1,1,-10] width=28 seqs=8
MTCH_ARAAR ( 545) DNALTLADAISDLPPVTNSEANDVRNYN  94
MTCH_ARATH ( 553) DNALTLADAISDLPPVTNYVANDVMDYN  94
MTDM_ARATH (1333) FRPITVRDTIGDLPSVENGDSRTNKEYK 100
MTDM_CHICK (1277) FRTITVRDTMSDLPEIRNGASALEISYN  48
MTDM_HUMAN (1241) FRTITVRDTMSDLPEVRNGASALEISYN  48
MTDM_MOUSE (1247) FRTITERDTMSDLPEIQNGASNSEIPYN  63
MTDM_PARLI (1354) YRTITVRDTMSDLPTINNGAQKLEISYD  75
MTDM_XENLA (1237) FRTITVRDTMSDLPEIRNGASALEISYN  48
//
ID   Methylases Eukaryotes; BLOCK
AC   MethylaF; distance from previous block=(19,33)
DE   MTCH_ARATH Chromomethylase Arabidopsis coding, tra... family
BL   GDP motif=[8,0,17] motomat=[1,1,-10] width=54 seqs=8
MTCH_ARAAR ( 606) DHHPLELRDDDLERISYIPKKKGANFRDMPGVLVHNNKAQLNLRVKRAKLKSGK 100
MTCH_ARATH ( 614) DHQPLVLGDDDLERVSYIPKQKGANYRDMPGVLVHNNKAEINPRFRAKLKSGKN  89
MTDM_ARATH (1380) DHICKAMNELNLIRCKLIPTRPGADWHDLPKRKVTLSDGRVEEMIPFCLPNTAE  97
MTDM_CHICK (1326) DHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTSTRKLRYTHHEKKN  44
MTDM_HUMAN (1290) DHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKN  43
MTDM_MOUSE (1296) GPYLQGHEPTGGCPHAHIPLFPGSDWRDLPNIQVRLGDGVIADKLQYTFHDVKN  94
MTDM_PARLI (1403) DHICKDMSSLVAARMKHIPLAPGSDWRDLPNIPVTLKDGTTCRKLRYTHKDKKN  48
MTDM_XENLA (1286) DHVCKDMSALVAARMRHIPLAPGSDWRDLPNMEVRLSDGTTSRKLRYTHHDKKN  45
//
ID   Methylases Eukaryotes; BLOCK
AC   MethylaG; distance from previous block=(27,68)
DE   MTCH_ARATH Chromomethylase Arabidopsis coding, tra... family
BL   AIA motif=[8,0,17] motomat=[1,1,-10] width=57 seqs=8
MTCH_ARAAR ( 695) EPHNQCVIHPMQERVLSVRENARLQGFPDCYKLCGSIKEKYIQVGNAVAVPVGVALG  96
MTCH_ARATH ( 702) EPHNQCVIHPMQNRVLSVRENARLQGFPDCYKLCGTIKEKYIQVGNAVAVPVGVALG  98
MTDM_ARATH (1461) MGKVGMCFHPEQHRILTVRECARSQGFPDSYEFAGNINHKHRQIGNAVPPPLAFALG 100
MTDM_CHICK (1447) MGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIG  60
MTDM_HUMAN (1412) MGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIG  60
MTDM_MOUSE (1417) MGKQGRVLHPEQHRVVSVRECARSQGFPDSYRFFGNILDRHRQVGNAVPPPLAKAIG  66
MTDM_PARLI (1524) MGKQGRVLHPEQHRVVSVRECARSQGFPDTYRFFGSILDKHRQIGNAVPPPMAAAIG  68
MTDM_XENLA (1407) MGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLSRAIG  64
//