1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
|
Sample files for protomat (Block Maker)
S. Henikoff, J. G. Henikoff, W. J. Alford & S. Pietrokovski, "Automated
construction and graphical presentation of protein blocks from unaligned
sequences", Gene-COMBIS, Gene 163 (1995) GC 17-26.
Protomat uses Ham Smith's "motif" algorithm as implemented in Block Maker:
http://blocks.fhcrc.org/blockmkr/make_blocks.html
protomat.csh runs the protomat system to construct blocks from an
input of of protein sequences in fasta format. Example is:
protomat.csh lipo.pros
Compare results with files in distribution/
|
