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<div class="title">strsvsample05.cpp</div> </div>
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<p>Example of how to use bm::str_sparse_vector<> - succinct container for bit-transposed string collections for deserialization of only select elements from the serialized BLOB</p><dl class="section see"><dt>See also</dt><dd><a class="el" href="classbm_1_1str__sparse__vector.html" title="sparse vector for strings with compression using bit transposition method">bm::str_sparse_vector</a> </dd>
<dd>
<a class="el" href="classbm_1_1sparse__vector__deserializer.html" title="sparse vector de-serializer">bm::sparse_vector_deserializer</a> </dd>
<dd>
<a class="el" href="classbm_1_1sparse__vector__serializer.html">bm::sparse_vector_serializer</a></dd></dl>
<div class="fragment"><div class="line"><span class="comment">/*</span></div>
<div class="line"><span class="comment">Copyright(c) 2002-2017 Anatoliy Kuznetsov(anatoliy_kuznetsov at yahoo.com)</span></div>
<div class="line"><span class="comment"></span> </div>
<div class="line"><span class="comment">Licensed under the Apache License, Version 2.0 (the "License");</span></div>
<div class="line"><span class="comment">you may not use this file except in compliance with the License.</span></div>
<div class="line"><span class="comment">You may obtain a copy of the License at</span></div>
<div class="line"><span class="comment"></span> </div>
<div class="line"><span class="comment"> http://www.apache.org/licenses/LICENSE-2.0</span></div>
<div class="line"><span class="comment"></span> </div>
<div class="line"><span class="comment">Unless required by applicable law or agreed to in writing, software</span></div>
<div class="line"><span class="comment">distributed under the License is distributed on an "AS IS" BASIS,</span></div>
<div class="line"><span class="comment">WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.</span></div>
<div class="line"><span class="comment">See the License for the specific language governing permissions and</span></div>
<div class="line"><span class="comment">limitations under the License.</span></div>
<div class="line"><span class="comment"></span> </div>
<div class="line"><span class="comment">For more information please visit: http://bitmagic.io</span></div>
<div class="line"><span class="comment">*/</span></div>
<div class="line"><span class="comment"></span> </div>
<div class="line"><span class="comment">/** \example strsvsample05.cpp</span></div>
<div class="line"><span class="comment"></span> </div>
<div class="line"><span class="comment"> Example of how to use bm::str_sparse_vector<> - succinct container for</span></div>
<div class="line"><span class="comment"> bit-transposed string collections for deserialization of only select elements</span></div>
<div class="line"><span class="comment"> from the serialized BLOB</span></div>
<div class="line"><span class="comment"> </span></div>
<div class="line"><span class="comment"> \sa bm::str_sparse_vector</span></div>
<div class="line"><span class="comment"> \sa bm::sparse_vector_deserializer</span></div>
<div class="line"><span class="comment"> \sa bm::sparse_vector_serializer</span></div>
<div class="line"><span class="comment"></span> </div>
<div class="line"><span class="comment">*/</span></div>
<div class="line"><span class="comment"></span> </div>
<div class="line"><span class="comment">/*! \file strsvsample05.cpp</span></div>
<div class="line"><span class="comment"> \brief Example: str_sparse_vector<> gather deserialization example</span></div>
<div class="line"><span class="comment"> </span></div>
<div class="line"><span class="comment"> This example loads a range of a sparse vector from an STL container to save</span></div>
<div class="line"><span class="comment"> memory and improve deserialization performance</span></div>
<div class="line"><span class="comment">*/</span></div>
<div class="line"> </div>
<div class="line"><span class="preprocessor">#include <iostream></span></div>
<div class="line"><span class="preprocessor">#include <string></span></div>
<div class="line"><span class="preprocessor">#include <vector></span></div>
<div class="line"><span class="preprocessor">#include <assert.h></span></div>
<div class="line"> </div>
<div class="line"><span class="preprocessor">#include "<a class="code" href="bm_8h.html">bm.h</a>"</span></div>
<div class="line"><span class="preprocessor">#include "<a class="code" href="bmstrsparsevec_8h.html">bmstrsparsevec.h</a>"</span></div>
<div class="line"><span class="preprocessor">#include "<a class="code" href="bmsparsevec__serial_8h.html">bmsparsevec_serial.h</a>"</span></div>
<div class="line"> </div>
<div class="line"> </div>
<div class="line"><span class="keyword">using namespace </span>std;</div>
<div class="line"> </div>
<div class="line"><span class="keyword">typedef</span> <a name="_a0"></a><a class="code" href="classbm_1_1bvector.html">bm::bvector<></a> <a name="a1"></a><a class="code" href="strsvsample05_8cpp.html#a4ca03dfc387c36e69ea916426572acdc">bvector_type</a>;</div>
<div class="line"><span class="keyword">typedef</span> <a name="_a2"></a><a class="code" href="classbm_1_1str__sparse__vector.html">bm::str_sparse_vector<char, bvector_type, 5></a> <a name="a3"></a><a class="code" href="strsvsample05_8cpp.html#a9935797ae553d12319da5e0d9d68fc74">str_sv_type</a>;</div>
<div class="line"> </div>
<div class="line"> </div>
<div class="line"> </div>
<div class="line"> </div>
<div class="line"><span class="keywordtype">int</span> <a name="a4"></a><a class="code" href="strsvsample05_8cpp.html#a840291bc02cba5474a4cb46a9b9566fe">main</a>(<span class="keywordtype">void</span>)</div>
<div class="line">{</div>
<div class="line"> <span class="keywordflow">try</span></div>
<div class="line"> {</div>
<div class="line"> <a class="code" href="classbm_1_1str__sparse__vector.html">str_sv_type</a> str_sv1;</div>
<div class="line"> <a class="code" href="classbm_1_1str__sparse__vector.html">str_sv_type</a> str_sv2;</div>
<div class="line"> <a class="code" href="classbm_1_1str__sparse__vector.html">str_sv_type</a> str_sv3;</div>
<div class="line"> </div>
<div class="line"> {</div>
<div class="line"> <a class="code" href="classbm_1_1str__sparse__vector.html">str_sv_type</a> str_sv0;</div>
<div class="line"> <span class="comment">// here we generate collection of k-mer (4-mer) strings</span></div>
<div class="line"> <span class="comment">// imitating a DNA sequence</span></div>
<div class="line"> {</div>
<div class="line"> <span class="keyword">auto</span> bi = str_sv0.<a name="a5"></a><a class="code" href="classbm_1_1str__sparse__vector.html#a53171ad593a71b3a51f9b7c09eecb361">get_back_inserter</a>();</div>
<div class="line"> <span class="keywordflow">for</span> (<span class="keywordtype">unsigned</span> i = 0; i < 100000; ++i)</div>
<div class="line"> {</div>
<div class="line"> bi = <span class="stringliteral">"ATGC"</span>;</div>
<div class="line"> bi = <span class="stringliteral">"GCTA"</span>;</div>
<div class="line"> bi = <span class="stringliteral">"GCAA"</span>;</div>
<div class="line"> bi = <span class="stringliteral">"TATA"</span>;</div>
<div class="line"> } <span class="comment">// for</span></div>
<div class="line"> }</div>
<div class="line"> str_sv1.<a name="a6"></a><a class="code" href="classbm_1_1str__sparse__vector.html#a37cb08354bd14dd1355bdeb5f18a140c">remap_from</a>(str_sv0); <span class="comment">// SV1 now contains a remapped(smaller) copy of SV0</span></div>
<div class="line"> }</div>
<div class="line"> <a name="a7"></a><a class="code" href="bm_8h.html#ad9736d9521d713fa5d48859aa720bfdd">BM_DECLARE_TEMP_BLOCK</a>(tb)</div>
<div class="line"> str_sv1.<a name="a8"></a><a class="code" href="classbm_1_1str__sparse__vector.html#a8f463b96e96c49e1b04705600730333f">optimize</a>(tb);</div>
<div class="line"> </div>
<div class="line"> </div>
<div class="line"> <span class="comment">// calculate memory footprint</span></div>
<div class="line"> <span class="comment">//</span></div>
<div class="line"> <a name="_a9"></a><a class="code" href="structbm_1_1str__sparse__vector_1_1statistics.html">str_sv_type::statistics</a> st;</div>
<div class="line"> str_sv1.<a name="a10"></a><a class="code" href="classbm_1_1str__sparse__vector.html#a6fed7d83ae70e7b4c9adea14aa6fd218">calc_stat</a>(&st);</div>
<div class="line"> </div>
<div class="line"> cout << <span class="stringliteral">"Used memory: "</span> << st.<a name="a11"></a><a class="code" href="structbm_1_1bv__statistics.html#aeb3cae5be872eed7fbe4191a8d710e42">memory_used</a> << std::endl;</div>
<div class="line"> </div>
<div class="line"> <a name="_a12"></a><a class="code" href="structbm_1_1sparse__vector__serial__layout.html">bm::sparse_vector_serial_layout<str_sv_type></a> sv_lay;</div>
<div class="line"> </div>
<div class="line"> <span class="comment">// construct a serializer utility class, setup serialization parameters</span></div>
<div class="line"> <span class="comment">//</span></div>
<div class="line"> <span class="comment">// please note, use of "set_bookmarks()" to enable fast range</span></div>
<div class="line"> <span class="comment">// deserialization. Bookmarks somewhat increase the BLOB size but allow</span></div>
<div class="line"> <span class="comment">// more effeiciently skip parts which we would not need (paging) and</span></div>
<div class="line"> <span class="comment">// avoid decompression of blocks we would never need</span></div>
<div class="line"> <span class="comment">//</span></div>
<div class="line"> <span class="comment">// This example sets "128" as a bookmarks parameter, but you have to</span></div>
<div class="line"> <span class="comment">// experiment with what works for you, between 4 and 512</span></div>
<div class="line"> <span class="comment">//</span></div>
<div class="line"> <span class="comment">// Each block corresponds to 64K vector element</span></div>
<div class="line"> <span class="comment">// making bookmarks after each block does not make much sense</span></div>
<div class="line"> <span class="comment">// because decode is reasonably fast and some residual throw away</span></div>
<div class="line"> <span class="comment">// is usually ok.</span></div>
<div class="line"> <span class="comment">//</span></div>
<div class="line"> <a name="_a13"></a><a class="code" href="classbm_1_1sparse__vector__serializer.html">bm::sparse_vector_serializer<str_sv_type></a> sv_serializer;</div>
<div class="line"> sv_serializer.<a name="a14"></a><a class="code" href="classbm_1_1sparse__vector__serializer.html#a1f2c7b4052cafe17691dac1228bc284a">set_bookmarks</a>(<span class="keyword">true</span>, 128);</div>
<div class="line"> </div>
<div class="line"> </div>
<div class="line"> <span class="comment">// run str-vector serialization with compression</span></div>
<div class="line"> <span class="comment">//</span></div>
<div class="line"> sv_serializer.<a name="a15"></a><a class="code" href="classbm_1_1sparse__vector__serializer.html#ab5708d236c5fba3fda5d55683321b8f3">serialize</a>(str_sv1, sv_lay);</div>
<div class="line"> </div>
<div class="line"> <span class="keyword">const</span> <span class="keywordtype">unsigned</span> <span class="keywordtype">char</span>* buf = sv_lay.<a name="a16"></a><a class="code" href="structbm_1_1sparse__vector__serial__layout.html#a294902a56855b5bde661b07bba697ab2">buf</a>();</div>
<div class="line"> cout << <span class="stringliteral">"Serialized size = "</span> << sv_lay.<a name="a17"></a><a class="code" href="structbm_1_1sparse__vector__serial__layout.html#a1e735c5dd7f3f389b7d76fa22cc57da1">size</a>() << endl;</div>
<div class="line"> </div>
<div class="line"> <span class="comment">// instantiate deserializer utility class</span></div>
<div class="line"> <span class="comment">//</span></div>
<div class="line"> <a name="_a18"></a><a class="code" href="classbm_1_1sparse__vector__deserializer.html">bm::sparse_vector_deserializer<str_sv_type></a> sv_deserial;</div>
<div class="line"> </div>
<div class="line"> </div>
<div class="line"> <a class="code" href="classbm_1_1bvector.html#a405dd9ed048c935c84a5086ec8ba3649">bvector_type::size_type</a> from = 100000;</div>
<div class="line"> <a class="code" href="classbm_1_1bvector.html#a405dd9ed048c935c84a5086ec8ba3649">bvector_type::size_type</a> to = from + 65536;</div>
<div class="line"> {</div>
<div class="line"> <span class="comment">// 1.</span></div>
<div class="line"> <span class="comment">// one way to deserialize is to provide a mask vector</span></div>
<div class="line"> <span class="comment">// specifying which sparse vector elements needs to be</span></div>
<div class="line"> <span class="comment">// decompressed from the BLOB</span></div>
<div class="line"> <span class="comment">// mask vector does not necessarily has to be just one range</span></div>
<div class="line"> <span class="comment">//</span></div>
<div class="line"> <a name="_a19"></a><a class="code" href="classbm_1_1bvector.html">bvector_type</a> bv_mask;</div>
<div class="line"> bv_mask.<a name="a20"></a><a class="code" href="classbm_1_1bvector.html#aafb2ecaa1a55856533e6b4afbf788eae">set_range</a>(from, to);</div>
<div class="line"> sv_deserial.<a name="a21"></a><a class="code" href="classbm_1_1sparse__vector__deserializer.html#afbc1270f03b82203bdf66e2abedcf34a">deserialize</a>(str_sv2, buf, bv_mask);</div>
<div class="line"> </div>
<div class="line"> </div>
<div class="line"> <span class="comment">// 2.</span></div>
<div class="line"> <span class="comment">// If it is just one range (common use case for paging)</span></div>
<div class="line"> <span class="comment">// it is faster and cleaner to use deserialize_range().</span></div>
<div class="line"> <span class="comment">// It will produce the same result as with (1) just faster.</span></div>
<div class="line"> <span class="comment">//</span></div>
<div class="line"> sv_deserial.<a name="a22"></a><a class="code" href="classbm_1_1sparse__vector__deserializer.html#a73c7a232fa75cb190ed86b0ee92e2c80">deserialize_range</a>(str_sv3, buf, from, to);</div>
<div class="line"> </div>
<div class="line"> <span class="comment">// run a quick comparison, that selected range matches values in</span></div>
<div class="line"> <span class="comment">// the container str_sv2, str_sv3</span></div>
<div class="line"> <span class="comment">//</span></div>
<div class="line"> <span class="keywordtype">char</span> s1[16]; <span class="keywordtype">char</span> s2[16]; <span class="keywordtype">char</span> s3[16];</div>
<div class="line"> <span class="keywordflow">for</span> (<a class="code" href="classbm_1_1bvector.html#a405dd9ed048c935c84a5086ec8ba3649">bvector_type::size_type</a> j = from; j < to; ++j)</div>
<div class="line"> {</div>
<div class="line"> str_sv1.<a name="a23"></a><a class="code" href="classbm_1_1str__sparse__vector.html#abd99eb3c42248903bd99df39aa4f4deb">get</a>(j, s1, <span class="keyword">sizeof</span>(s1));</div>
<div class="line"> str_sv2.<a class="code" href="classbm_1_1str__sparse__vector.html#abd99eb3c42248903bd99df39aa4f4deb">get</a>(j, s2, <span class="keyword">sizeof</span>(s2));</div>
<div class="line"> str_sv3.<a class="code" href="classbm_1_1str__sparse__vector.html#abd99eb3c42248903bd99df39aa4f4deb">get</a>(j, s3, <span class="keyword">sizeof</span>(s3));</div>
<div class="line"> </div>
<div class="line"> <span class="keywordtype">int</span> cmp;</div>
<div class="line"> cmp = ::strcmp(s1, s2);</div>
<div class="line"> assert(cmp==0);</div>
<div class="line"> cmp = ::strcmp(s1, s3);</div>
<div class="line"> assert(cmp==0);</div>
<div class="line"> </div>
<div class="line"> } <span class="comment">// for j</span></div>
<div class="line"> cout << <span class="stringliteral">"Gather deserialization check OK"</span> << endl;</div>
<div class="line"> }</div>
<div class="line"> </div>
<div class="line"> }</div>
<div class="line"> <span class="keywordflow">catch</span>(std::exception& ex)</div>
<div class="line"> {</div>
<div class="line"> std::cerr << ex.what() << std::endl;</div>
<div class="line"> <span class="keywordflow">return</span> 1;</div>
<div class="line"> }</div>
<div class="line"> </div>
<div class="line"> </div>
<div class="line"> <span class="keywordflow">return</span> 0;</div>
<div class="line">}</div>
<div class="line"> </div>
</div><!-- fragment --> </div><!-- contents -->
<div class="ttc" id="aclassbm_1_1bvector_html_aafb2ecaa1a55856533e6b4afbf788eae"><div class="ttname"><a href="classbm_1_1bvector.html#aafb2ecaa1a55856533e6b4afbf788eae">bm::bvector::set_range</a></div><div class="ttdeci">bvector< Alloc > & set_range(size_type left, size_type right, bool value=true)</div><div class="ttdoc">Sets all bits in the specified closed interval [left,right] Interval must be inside the bvector's siz...</div><div class="ttdef"><b>Definition:</b> <a href="bm_8h_source.html#l02158">bm.h:2158</a></div></div>
<div class="ttc" id="aclassbm_1_1sparse__vector__deserializer_html"><div class="ttname"><a href="classbm_1_1sparse__vector__deserializer.html">bm::sparse_vector_deserializer</a></div><div class="ttdoc">sparse vector de-serializer</div><div class="ttdef"><b>Definition:</b> <a href="bmsparsevec__serial_8h_source.html#l00223">bmsparsevec_serial.h:223</a></div></div>
<div class="ttc" id="astrsvsample05_8cpp_html_a840291bc02cba5474a4cb46a9b9566fe"><div class="ttname"><a href="strsvsample05_8cpp.html#a840291bc02cba5474a4cb46a9b9566fe">main</a></div><div class="ttdeci">int main(void)</div><div class="ttdef"><b>Definition:</b> <a href="strsvsample05_8cpp_source.html#l00056">strsvsample05.cpp:56</a></div></div>
<div class="ttc" id="aclassbm_1_1str__sparse__vector_html_abd99eb3c42248903bd99df39aa4f4deb"><div class="ttname"><a href="classbm_1_1str__sparse__vector.html#abd99eb3c42248903bd99df39aa4f4deb">bm::str_sparse_vector::get</a></div><div class="ttdeci">size_type get(size_type idx, value_type *str, size_type buf_size) const BMNOEXCEPT</div><div class="ttdoc">get specified element</div><div class="ttdef"><b>Definition:</b> <a href="bmstrsparsevec_8h_source.html#l01295">bmstrsparsevec.h:1295</a></div></div>
<div class="ttc" id="abm_8h_html_ad9736d9521d713fa5d48859aa720bfdd"><div class="ttname"><a href="bm_8h.html#ad9736d9521d713fa5d48859aa720bfdd">BM_DECLARE_TEMP_BLOCK</a></div><div class="ttdeci">#define BM_DECLARE_TEMP_BLOCK(x)</div><div class="ttdef"><b>Definition:</b> <a href="bm_8h_source.html#l00047">bm.h:47</a></div></div>
<div class="ttc" id="astructbm_1_1sparse__vector__serial__layout_html_a294902a56855b5bde661b07bba697ab2"><div class="ttname"><a href="structbm_1_1sparse__vector__serial__layout.html#a294902a56855b5bde661b07bba697ab2">bm::sparse_vector_serial_layout::buf</a></div><div class="ttdeci">const unsigned char * buf() const</div><div class="ttdoc">Return serialization buffer pointer.</div><div class="ttdef"><b>Definition:</b> <a href="bmsparsevec__serial_8h_source.html#l00106">bmsparsevec_serial.h:106</a></div></div>
<div class="ttc" id="aclassbm_1_1str__sparse__vector_html_a6fed7d83ae70e7b4c9adea14aa6fd218"><div class="ttname"><a href="classbm_1_1str__sparse__vector.html#a6fed7d83ae70e7b4c9adea14aa6fd218">bm::str_sparse_vector::calc_stat</a></div><div class="ttdeci">void calc_stat(struct str_sparse_vector< CharType, BV, MAX_STR_SIZE >::statistics *st) const BMNOEXCEPT</div><div class="ttdoc">Calculates memory statistics.</div><div class="ttdef"><b>Definition:</b> <a href="bmstrsparsevec_8h_source.html#l01338">bmstrsparsevec.h:1338</a></div></div>
<div class="ttc" id="abmsparsevec__serial_8h_html"><div class="ttname"><a href="bmsparsevec__serial_8h.html">bmsparsevec_serial.h</a></div><div class="ttdoc">Serialization for sparse_vector<></div></div>
<div class="ttc" id="astructbm_1_1sparse__vector__serial__layout_html"><div class="ttname"><a href="structbm_1_1sparse__vector__serial__layout.html">bm::sparse_vector_serial_layout</a></div><div class="ttdoc">layout class for serialization buffer structure</div><div class="ttdef"><b>Definition:</b> <a href="bmsparsevec__serial_8h_source.html#l00057">bmsparsevec_serial.h:57</a></div></div>
<div class="ttc" id="aclassbm_1_1bvector_html"><div class="ttname"><a href="classbm_1_1bvector.html">bm::bvector<></a></div></div>
<div class="ttc" id="aclassbm_1_1str__sparse__vector_html"><div class="ttname"><a href="classbm_1_1str__sparse__vector.html">bm::str_sparse_vector</a></div><div class="ttdoc">sparse vector for strings with compression using bit transposition method</div><div class="ttdef"><b>Definition:</b> <a href="bmstrsparsevec_8h_source.html#l00056">bmstrsparsevec.h:56</a></div></div>
<div class="ttc" id="abmstrsparsevec_8h_html"><div class="ttname"><a href="bmstrsparsevec_8h.html">bmstrsparsevec.h</a></div><div class="ttdoc">string sparse vector based on bit-transposed matrix</div></div>
<div class="ttc" id="aclassbm_1_1str__sparse__vector_html_a53171ad593a71b3a51f9b7c09eecb361"><div class="ttname"><a href="classbm_1_1str__sparse__vector.html#a53171ad593a71b3a51f9b7c09eecb361">bm::str_sparse_vector::get_back_inserter</a></div><div class="ttdeci">back_insert_iterator get_back_inserter()</div><div class="ttdoc">Provide back insert iterator Back insert iterator implements buffered insertion, which is faster,...</div><div class="ttdef"><b>Definition:</b> <a href="bmstrsparsevec_8h_source.html#l00721">bmstrsparsevec.h:721</a></div></div>
<div class="ttc" id="aclassbm_1_1sparse__vector__serializer_html_ab5708d236c5fba3fda5d55683321b8f3"><div class="ttname"><a href="classbm_1_1sparse__vector__serializer.html#ab5708d236c5fba3fda5d55683321b8f3">bm::sparse_vector_serializer::serialize</a></div><div class="ttdeci">void serialize(const SV &sv, sparse_vector_serial_layout< SV > &sv_layout)</div><div class="ttdoc">Serialize sparse vector into a memory buffer(s) structure.</div><div class="ttdef"><b>Definition:</b> <a href="bmsparsevec__serial_8h_source.html#l00628">bmsparsevec_serial.h:628</a></div></div>
<div class="ttc" id="astrsvsample05_8cpp_html_a9935797ae553d12319da5e0d9d68fc74"><div class="ttname"><a href="strsvsample05_8cpp.html#a9935797ae553d12319da5e0d9d68fc74">str_sv_type</a></div><div class="ttdeci">bm::str_sparse_vector< char, bvector_type, 5 > str_sv_type</div><div class="ttdef"><b>Definition:</b> <a href="strsvsample05_8cpp_source.html#l00051">strsvsample05.cpp:51</a></div></div>
<div class="ttc" id="aclassbm_1_1sparse__vector__deserializer_html_afbc1270f03b82203bdf66e2abedcf34a"><div class="ttname"><a href="classbm_1_1sparse__vector__deserializer.html#afbc1270f03b82203bdf66e2abedcf34a">bm::sparse_vector_deserializer::deserialize</a></div><div class="ttdeci">void deserialize(SV &sv, const unsigned char *buf)</div><div class="ttdef"><b>Definition:</b> <a href="bmsparsevec__serial_8h_source.html#l00243">bmsparsevec_serial.h:243</a></div></div>
<div class="ttc" id="aclassbm_1_1sparse__vector__serializer_html_a1f2c7b4052cafe17691dac1228bc284a"><div class="ttname"><a href="classbm_1_1sparse__vector__serializer.html#a1f2c7b4052cafe17691dac1228bc284a">bm::sparse_vector_serializer::set_bookmarks</a></div><div class="ttdeci">void set_bookmarks(bool enable, unsigned bm_interval=256)</div><div class="ttdoc">Add skip-markers for faster range deserialization.</div><div class="ttdef"><b>Definition:</b> <a href="bmsparsevec__serial_8h_source.html#l00183">bmsparsevec_serial.h:183</a></div></div>
<div class="ttc" id="astructbm_1_1sparse__vector__serial__layout_html_a1e735c5dd7f3f389b7d76fa22cc57da1"><div class="ttname"><a href="structbm_1_1sparse__vector__serial__layout.html#a1e735c5dd7f3f389b7d76fa22cc57da1">bm::sparse_vector_serial_layout::size</a></div><div class="ttdeci">size_t size() const</div><div class="ttdoc">return current serialized size</div><div class="ttdef"><b>Definition:</b> <a href="bmsparsevec__serial_8h_source.html#l00084">bmsparsevec_serial.h:84</a></div></div>
<div class="ttc" id="astructbm_1_1bv__statistics_html_aeb3cae5be872eed7fbe4191a8d710e42"><div class="ttname"><a href="structbm_1_1bv__statistics.html#aeb3cae5be872eed7fbe4191a8d710e42">bm::bv_statistics::memory_used</a></div><div class="ttdeci">size_t memory_used</div><div class="ttdoc">memory usage for all blocks and service tables</div><div class="ttdef"><b>Definition:</b> <a href="bmfunc_8h_source.html#l00061">bmfunc.h:61</a></div></div>
<div class="ttc" id="aclassbm_1_1sparse__vector__deserializer_html_a73c7a232fa75cb190ed86b0ee92e2c80"><div class="ttname"><a href="classbm_1_1sparse__vector__deserializer.html#a73c7a232fa75cb190ed86b0ee92e2c80">bm::sparse_vector_deserializer::deserialize_range</a></div><div class="ttdeci">void deserialize_range(SV &sv, const unsigned char *buf, size_type from, size_type to)</div><div class="ttdef"><b>Definition:</b> <a href="bmsparsevec__serial_8h_source.html#l00788">bmsparsevec_serial.h:788</a></div></div>
<div class="ttc" id="aclassbm_1_1str__sparse__vector_html_a8f463b96e96c49e1b04705600730333f"><div class="ttname"><a href="classbm_1_1str__sparse__vector.html#a8f463b96e96c49e1b04705600730333f">bm::str_sparse_vector::optimize</a></div><div class="ttdeci">void optimize(bm::word_t *temp_block=0, typename bvector_type::optmode opt_mode=bvector_type::opt_compress, typename str_sparse_vector< CharType, BV, MAX_STR_SIZE >::statistics *stat=0)</div><div class="ttdoc">run memory optimization for all vector plains</div><div class="ttdef"><b>Definition:</b> <a href="bmstrsparsevec_8h_source.html#l01323">bmstrsparsevec.h:1323</a></div></div>
<div class="ttc" id="astrsvsample05_8cpp_html_a4ca03dfc387c36e69ea916426572acdc"><div class="ttname"><a href="strsvsample05_8cpp.html#a4ca03dfc387c36e69ea916426572acdc">bvector_type</a></div><div class="ttdeci">bm::bvector bvector_type</div><div class="ttdef"><b>Definition:</b> <a href="strsvsample05_8cpp_source.html#l00050">strsvsample05.cpp:50</a></div></div>
<div class="ttc" id="aclassbm_1_1bvector_html_a405dd9ed048c935c84a5086ec8ba3649"><div class="ttname"><a href="classbm_1_1bvector.html#a405dd9ed048c935c84a5086ec8ba3649">bm::bvector::size_type</a></div><div class="ttdeci">bm::id_t size_type</div><div class="ttdef"><b>Definition:</b> <a href="bm_8h_source.html#l00117">bm.h:117</a></div></div>
<div class="ttc" id="abm_8h_html"><div class="ttname"><a href="bm_8h.html">bm.h</a></div><div class="ttdoc">Compressed bit-vector bvector<> container, set algebraic methods, traversal iterators.</div></div>
<div class="ttc" id="aclassbm_1_1sparse__vector__serializer_html"><div class="ttname"><a href="classbm_1_1sparse__vector__serializer.html">bm::sparse_vector_serializer</a></div><div class="ttdef"><b>Definition:</b> <a href="bmsparsevec__serial_8h_source.html#l00160">bmsparsevec_serial.h:160</a></div></div>
<div class="ttc" id="aclassbm_1_1str__sparse__vector_html_a37cb08354bd14dd1355bdeb5f18a140c"><div class="ttname"><a href="classbm_1_1str__sparse__vector.html#a37cb08354bd14dd1355bdeb5f18a140c">bm::str_sparse_vector::remap_from</a></div><div class="ttdeci">void remap_from(const str_sparse_vector &str_sv)</div><div class="ttdoc">Build remapping profile and load content from another sparse vector.</div><div class="ttdef"><b>Definition:</b> <a href="bmstrsparsevec_8h_source.html#l01600">bmstrsparsevec.h:1600</a></div></div>
<div class="ttc" id="astructbm_1_1str__sparse__vector_1_1statistics_html"><div class="ttname"><a href="structbm_1_1str__sparse__vector_1_1statistics.html">bm::str_sparse_vector::statistics</a></div><div class="ttdef"><b>Definition:</b> <a href="bmstrsparsevec_8h_source.html#l00072">bmstrsparsevec.h:72</a></div></div>
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