1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
|
from bmtk.builder.networks import NetworkBuilder
cortex = NetworkBuilder('mcortex')
cortex.add_nodes(cell_name='Scnn1a_473845048',
potential='exc',
model_type='biophysical',
model_template='ctdb:Biophys1.hoc',
model_processing='aibs_perisomatic',
dynamics_params='472363762_fit.json',
morphology='Scnn1a_473845048_m.swc')
cortex.build()
cortex.save_nodes(output_dir='network')
thalamus = NetworkBuilder('mthalamus')
thalamus.add_nodes(N=10,
pop_name='tON',
potential='exc',
model_type='virtual')
thalamus.add_edges(source={'pop_name': 'tON'}, target=cortex.nodes(),
connection_rule=5,
syn_weight=0.001,
delay=2.0,
weight_function='wmax',
target_sections=['basal', 'apical'],
distance_range=[0.0, 150.0],
dynamics_params='AMPA_ExcToExc.json',
model_template='exp2syn')
thalamus.build()
thalamus.save_nodes(output_dir='network')
thalamus.save_edges(output_dir='network')
|
