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import os, sys
from bmtk.simulator import pointnet
from bmtk.analyzer.spike_trains import plot_raster
import matplotlib.pyplot as plt
def run(config_file):
configure = pointnet.Config.from_json(config_file)
configure.build_env()
network = pointnet.PointNetwork.from_config(configure)
sim = pointnet.PointSimulator.from_config(configure, network)
sim.run()
plot_raster(config_file='simulation_config.json', group_by='pop_name')
# assert (spike_files_equal('output/spikes.csv', 'expected/spikes.csv'))
if __name__ == '__main__':
# Find the appropriate config.json file
config_path = None
if __file__ != sys.argv[-1]:
config_path = sys.argv[-1]
if not os.path.exists(config_path):
raise AttributeError('configuration file {} does not exist.'.format(config_path))
else:
for cfg_path in ['config.json', 'config.simulation.json', 'simulation_config.json']:
if os.path.exists(cfg_path):
config_path = cfg_path
break
else:
raise AttributeError('Could not find configuration json file.')
run(config_path)
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