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import sys
import os
from bmtk.simulator import popnet
from bmtk.analyzer.firing_rates import plot_rates_popnet
def run(config_file):
configure = popnet.config.from_json(config_file)
configure.build_env()
network = popnet.PopNetwork.from_config(configure)
sim = popnet.PopSimulator.from_config(configure, network)
sim.run()
cells_file = 'network/V1_node_types.csv'
rates_file = 'output/firing_rates.csv'
plot_rates_popnet(cells_file, rates_file, model_keys='pop_name')
if __name__ == '__main__':
# Find the appropriate config.json file
config_path = None
if __file__ != sys.argv[-1]:
config_path = sys.argv[-1]
if not os.path.exists(config_path):
raise AttributeError('configuration file {} does not exist.'.format(config_path))
else:
for cfg_path in ['config.json', 'config.simulation.json', 'simulation_config.json']:
if os.path.exists(cfg_path):
config_path = cfg_path
break
else:
raise AttributeError('Could not find configuration json file.')
run(config_path)
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