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// ************************************************************************************************
//
// BornAgain: simulate and fit reflection and scattering
//
//! @file Device/IO/ZipUtil.cpp
//! @brief Implements functions in namespace ZipUtil.
//!
//! @homepage http://www.bornagainproject.org
//! @license GNU General Public License v3 or higher (see COPYING)
//! @copyright Forschungszentrum Jülich GmbH 2023
//! @authors Scientific Computing Group at MLZ (see CITATION, AUTHORS)
//
// ************************************************************************************************
#include "Device/IO/ZipUtil.h"
#include "Base/Util/PathUtil.h"
#include "Base/Util/StringUtil.h"
#include <bzlib.h> // For Bzip2 decompression
#include <fstream>
#include <zlib.h> // For Gzip decompression
namespace {
const std::string GzipExtension = ".gz";
const std::string BzipExtension = ".bz2";
bool isGZipped(const std::string& fname)
{
return Base::Path::hasExtension(fname, GzipExtension);
}
bool isBZipped(const std::string& fname)
{
return Base::Path::hasExtension(fname, BzipExtension);
}
bool isCompressed(const std::string& fname)
{
return isGZipped(fname) || isBZipped(fname);
}
bool isNativeBinary(const std::string& fname)
{
const std::string ext = ZipUtil::uncompressedExtension(fname);
return ext == ".tif" || ext == ".tiff";
}
bool isBinary(const std::string& fname)
{
return isCompressed(fname) || isNativeBinary(fname);
}
} // namespace
std::string ZipUtil::uncompressedExtension(std::string fname)
{
if (isGZipped(fname))
fname = fname.substr(0, fname.size() - GzipExtension.size());
else if (isBZipped(fname))
fname = fname.substr(0, fname.size() - BzipExtension.size());
return Base::String::to_lower(Base::Path::extension(fname));
}
std::stringstream ZipUtil::file2stream(const std::string& fname)
{
if (!Base::Path::IsFileExists(fname))
throw std::runtime_error("File does not exist: " + fname);
// Open the input file
std::ifstream input_stream;
std::ios_base::openmode openmode = std::ios::in;
if (isBinary(fname))
openmode |= std::ios_base::binary;
input_stream.open(Base::Path::osPath(fname), openmode);
if (!input_stream.is_open())
throw std::runtime_error("Cannot open file for reading: " + fname);
if (!input_stream.good())
throw std::runtime_error("File is not good, probably it is a directory: " + fname);
// Read the file content into a string
std::ostringstream raw_stream;
raw_stream << input_stream.rdbuf();
std::string file_content = raw_stream.str();
// Decompressed content will be written to this stringstream
std::stringstream ss;
// Decompress if necessary
if (::isGZipped(fname)) {
// Gzip decompression
z_stream zs = {};
zs.next_in = reinterpret_cast<Bytef*>(const_cast<char*>(file_content.data()));
zs.avail_in = file_content.size();
if (inflateInit2(&zs, 15 + 32) != Z_OK) // 15 + 32 enables Gzip decoding
throw std::runtime_error("Failed to initialize Gzip decompression");
char buffer[4096];
do {
zs.next_out = reinterpret_cast<Bytef*>(buffer);
zs.avail_out = sizeof(buffer);
int ret = inflate(&zs, Z_NO_FLUSH);
if (ret != Z_OK && ret != Z_STREAM_END) {
inflateEnd(&zs);
throw std::runtime_error("Gzip decompression failed");
}
ss.write(buffer, sizeof(buffer) - zs.avail_out);
} while (zs.avail_out == 0);
inflateEnd(&zs);
} else if (::isBZipped(fname)) {
// Bzip2 decompression
bz_stream bzs = {};
bzs.next_in = const_cast<char*>(file_content.data());
bzs.avail_in = file_content.size();
if (BZ2_bzDecompressInit(&bzs, 0, 0) != BZ_OK)
throw std::runtime_error("Failed to initialize Bzip2 decompression");
char buffer[4096];
do {
bzs.next_out = buffer;
bzs.avail_out = sizeof(buffer);
int ret = BZ2_bzDecompress(&bzs);
if (ret != BZ_OK && ret != BZ_STREAM_END) {
BZ2_bzDecompressEnd(&bzs);
throw std::runtime_error("Bzip2 decompression failed");
}
ss.write(buffer, sizeof(buffer) - bzs.avail_out);
} while (bzs.avail_out == 0);
BZ2_bzDecompressEnd(&bzs);
} else {
// If not compressed, simply copy the file content
ss.str(file_content);
}
return ss;
}
void ZipUtil::stream2file(const std::string& fname, std::stringstream& s)
{
std::ofstream fout;
std::ios_base::openmode openmode = std::ios::out;
if (isBinary(fname))
openmode |= std::ios_base::binary;
fout.open(Base::Path::osPath(fname), openmode);
if (!fout.is_open())
throw std::runtime_error("Cannot open file for writing: " + fname);
if (!fout.good())
throw std::runtime_error("File is not good, probably it is a directory: " + fname);
const std::string& content = s.str(); // Get the content from the stringstream
if (isGZipped(fname)) {
// Gzip compression
z_stream zs = {};
if (deflateInit2(&zs, Z_DEFAULT_COMPRESSION, Z_DEFLATED, 15 + 16, 8, Z_DEFAULT_STRATEGY)
!= Z_OK)
throw std::runtime_error("Failed to initialize Gzip compression");
zs.next_in = reinterpret_cast<Bytef*>(const_cast<char*>(content.data()));
zs.avail_in = content.size();
char buffer[4096];
do {
zs.next_out = reinterpret_cast<Bytef*>(buffer);
zs.avail_out = sizeof(buffer);
int ret = deflate(&zs, Z_FINISH);
if (ret != Z_OK && ret != Z_STREAM_END) {
deflateEnd(&zs);
throw std::runtime_error("Gzip compression failed");
}
fout.write(buffer, sizeof(buffer) - zs.avail_out);
} while (zs.avail_out == 0);
deflateEnd(&zs);
} else if (isBZipped(fname)) {
// Bzip2 compression
bz_stream bzs = {};
if (BZ2_bzCompressInit(&bzs, 9, 0, 0) != BZ_OK) // 9 = max compression level
throw std::runtime_error("Failed to initialize Bzip2 compression");
bzs.next_in = const_cast<char*>(content.data());
bzs.avail_in = content.size();
char buffer[4096];
do {
bzs.next_out = buffer;
bzs.avail_out = sizeof(buffer);
int ret = BZ2_bzCompress(&bzs, BZ_FINISH);
if (ret != BZ_RUN_OK && ret != BZ_FINISH_OK && ret != BZ_STREAM_END) {
BZ2_bzCompressEnd(&bzs);
throw std::runtime_error("Bzip2 compression failed");
}
fout.write(buffer, sizeof(buffer) - bzs.avail_out);
} while (bzs.avail_out == 0);
BZ2_bzCompressEnd(&bzs);
} else {
// Write uncompressed content
fout.write(content.data(), content.size());
}
fout.close();
}
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