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// ************************************************************************** //
//
// BornAgain: simulate and fit reflection and scattering
//
//! @file Wrap/Swig/libBornAgainFit.i
//! @brief SWIG interface file for libBornAgainFit
//!
//! Configuration is done in Fit/CMakeLists.txt
//!
//! @homepage http://apps.jcns.fz-juelich.de/BornAgain
//! @license GNU General Public License v3 or higher (see COPYING)
//! @copyright Forschungszentrum Jülich GmbH 2013
//! @authors Scientific Computing Group at MLZ Garching
//
// ************************************************************************** //
%module(moduleimport="import $module") "libBornAgainFit"
%include "commons.i"
// %rename(minimize_cpp) mumufit::Minimizer::minimize;
%rename(add_cpp) mumufit::Parameters::add;
%{
#include "Fit/Kernel/Minimizer.h"
#include "Fit/Kernel/MinimizerFactory.h"
#include "Fit/Minimizer/IMinimizer.h"
%}
// The following goes verbatim from libBornAgainFit.i to libBornAgainFit_wrap.cxx.
// Note that the order matters, as base classes must be included before derived classes.
%include "Fit/Param/RealLimits.h"
%include "Fit/Param/AttLimits.h"
%include "Fit/Param/Parameter.h"
%include "Fit/Param/Parameters.h"
%include "Fit/Minimizer/IMinimizer.h"
%include "Fit/Minimizer/MinimizerResult.h"
%include "Fit/Kernel/MinimizerFactory.h"
//-----------------------------------------
// extensions for passing Python callbacks to build a simulation
//-----------------------------------------
// do not produce a Python interface to the auxiliary functions
%ignore BA_SWIG_convertPySequenceToVector;
%ignore BA_SWIG_pyCallWithParameters_Seq;
%ignore BA_SWIG_pyCallWithParameters_Float;
%inline
%{
// converts Python sequence to std::vector<double>
std::vector<double> BA_SWIG_convertPySequenceToVector(PyObject* seq)
{
// check if object is None
if (seq == nullptr || seq == Py_None)
throw std::runtime_error("BA_SWIG_convertPySequenceToVector: input is None");
// check for __len__ method
if (!PyObject_HasAttrString(seq, "__len__"))
throw std::runtime_error("BA_SWIG_convertPySequenceToVector: "
"input object does not have __len__ attribute");
// check for __getitem__ method
if (!PyObject_HasAttrString(seq, "__getitem__"))
throw std::runtime_error("BA_SWIG_convertPySequenceToVector: "
"input object does not have __getitem__ attribute");
// obtain the length of the sequence
Py_ssize_t length = PyObject_Length(seq);
if (length < 0)
throw std::runtime_error("BA_SWIG_convertPySequenceToVector: "
"sequence has negative length");
// vector to hold the data
std::vector<double> resultVec;
resultVec.reserve(static_cast<int>(length));
// convert each sequence element to double
for (Py_ssize_t i = 0; i < length; i++) {
// item at index i
PyObject* item = PyObject_GetItem(seq, PyLong_FromSsize_t(i));
if (item == nullptr)
throw std::runtime_error("BA_SWIG_convertPySequenceToVector: "
"failed to obtain item at index " + std::to_string(i));
// convert to double
double value;
if (PyFloat_Check(item))
value = PyFloat_AsDouble(item);
else if (PyLong_Check(item))
value = PyLong_AsDouble(item);
else {
Py_DECREF(item);
throw std::runtime_error("BA_SWIG_convertPySequenceToVector: "
"sequence contains non-numeric item at index " + std::to_string(i));
}
if (PyErr_Occurred()) {
Py_DECREF(item);
throw std::runtime_error("BA_SWIG_convertPySequenceToVector: "
"error converting item to double at index " + std::to_string(i));
}
Py_DECREF(item);
resultVec.push_back(value);
}
return resultVec;
}
std::vector<double> BA_SWIG_pyCallWithParameters_Seq(PyObject* pyFunc,
const mumufit::Parameters& parameters)
{
// execute a Python function which accepts a Parameters instance
// as its single input argument
if (!PyCallable_Check(pyFunc))
PyErr_SetString(PyExc_TypeError,
"BA_SWIG_pyCallWithParameters_Seq: first argument must be a Python callable");
// make a Python-wrapped Parameters instance
// NOTE: PyObject* SWIG_NewPointerObj(void* ptr, swig_type_info* ty, int own)
// creates a new Python pointer object.
mumufit::Parameters* parameters_ptr = const_cast<mumufit::Parameters*>(¶meters);
swig_type_info* pTypeInfo = SWIG_TypeQuery("mumufit::Parameters*");
PyObject* arg1 = SWIG_NewPointerObj(SWIG_as_voidptr(parameters_ptr), pTypeInfo, 0);
// call the Python function with the Parameters Python-object as argument
PyObject* pResult = PyObject_CallFunctionObjArgs(pyFunc, arg1, NULL);
Py_DECREF(arg1);
if (!pResult)
PyErr_SetString(PyExc_RuntimeError,
"BA_SWIG_pyCallWithParameters_Seq: calling Python function failed.");
// made a std::vector from the call result
std::vector<double> resultVec { BA_SWIG_convertPySequenceToVector(pResult) };
Py_DECREF(pResult);
return resultVec;
}
double BA_SWIG_pyCallWithParameters_Float(PyObject* pyFunc,
const mumufit::Parameters& parameters)
{
// execute a Python function which accepts a Parameters instance
// as its single input argument
if (!PyCallable_Check(pyFunc))
PyErr_SetString(PyExc_TypeError,
"BA_SWIG_pyCallWithParameters_Float: first argument must be a Python callable");
// make a Python-wrapped Parameters instance
// NOTE: PyObject* SWIG_NewPointerObj(void* ptr, swig_type_info* ty, int own)
// creates a new Python pointer object.
mumufit::Parameters* parameters_ptr = const_cast<mumufit::Parameters*>(¶meters);
swig_type_info* pTypeInfo = SWIG_TypeQuery("mumufit::Parameters*");
PyObject* arg1 = SWIG_NewPointerObj(SWIG_as_voidptr(parameters_ptr), pTypeInfo, 0);
// call the Python function with the Parameters Python-object as argument
PyObject* pResult = PyObject_CallFunctionObjArgs(pyFunc, arg1, NULL);
Py_DECREF(arg1);
if (!pResult)
PyErr_SetString(PyExc_RuntimeError,
"BA_SWIG_pyCallWithParameters_Float: calling Python function failed.");
// made a double from the call result
const double value = PyFloat_AsDouble(pResult);
Py_DECREF(pResult);
return value;
}
%}
namespace mumufit {
//--- Parameter x.value attribute
%extend Parameter{
%pythoncode %{
#--- Parameter x.value attribute
value = property(value, setValue)
error = property(error, setError)
%}
};
// Parameters accessors
%extend Parameters {
const Parameter& __getitem__(std::string name) const
{
return (*($self))[name];
}
const Parameter& __getitem__(size_t index) const
{
return (*($self))[index];
}
%pythoncode %{
def __iter__(self):
self._index = -1
return self
def __next__(self):
self._index += 1
if self._index < self.size():
return self[self._index]
else:
raise StopIteration
def add(self, name, value=None, vary=True,
min=-float('inf'), max=float('inf'), step=0.0):
par = None
if isinstance(name, Parameter):
par = name
else:
limits = AttLimits.limitless()
if min != -float('inf') and max != float('inf'):
limits = AttLimits.limited(min, max)
elif min != -float('inf') and max == float('inf'):
limits = AttLimits.lowerLimited(min)
elif min == -float('inf') and max != float('inf'):
limits = AttLimits.upperLimited(max)
if not vary:
limits = AttLimits.fixed()
par = Parameter(name, value, limits, step)
self.add_cpp(par)
%}
};
}
%include "Fit/Kernel/Minimizer.h"
// --- Setting up Minimizer callback ---
namespace mumufit {
%extend Minimizer {
mumufit::MinimizerResult _minimizeWithPyCallable_SCALAR(
PyObject* pCallable, const mumufit::Parameters& parameters)
{
fcn_scalar_t fcn = [pCallable](const mumufit::Parameters& pars)
{ return BA_SWIG_pyCallWithParameters_Float(pCallable, pars); };
return $self->minimize(fcn, parameters);
}
mumufit::MinimizerResult _minimizeWithPyCallable_SEQUENCE(
PyObject* pCallable, const mumufit::Parameters& parameters)
{
fcn_residual_t fcn = [pCallable](const mumufit::Parameters& pars)
{ return BA_SWIG_pyCallWithParameters_Seq(pCallable, pars); };
return $self->minimize(fcn, parameters);
}
};
%pythoncode %{
class Minimizer(Minimizer):
def __init__(self):
super().__init__();
# NOTE: Callback functions must be available during the lifetime of
# the Minimizer instance; therefore, they are stored internally.
self._min_fs = []
@staticmethod
def _isPySequence(obj):
""" Checks if a Python object is a sequence """
return (hasattr(obj, '__len__') and hasattr(obj, '__getitem__'))
def minimize(self, pyCallable:'objective fn', pars):
if not callable(pyCallable):
raise Exception("Minimizer (Python API): "
"The first argument is not a Python callable")
# single call to the callable to check return type
result = pyCallable(pars)
if isinstance(result, float):
self._min_fs.append(pyCallable)
return self._minimizeWithPyCallable_SCALAR(pyCallable, pars)
elif Minimizer._isPySequence(result):
self._min_fs.append(pyCallable)
return self._minimizeWithPyCallable_SEQUENCE(pyCallable, pars)
else:
raise Exception("Minimizer (Python API): Wrong callable type; "
"the return value must be either a Python float or sequence")
%}
} // namespace mumufit
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