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import numpy as np
from numpy.testing import (assert_equal, assert_array_equal,
assert_array_almost_equal, assert_raises)
import bottleneck as bn
from .reduce_test import (unit_maker as reduce_unit_maker,
unit_maker_argparse as unit_maker_parse_rankdata)
from .util import arrays, array_order
# ---------------------------------------------------------------------------
# partition, argpartition
def test_partition():
"test partition"
for func in (bn.partition,):
yield unit_maker, func
def test_argpartition():
"test argpartition"
for func in (bn.argpartition,):
yield unit_maker, func
def unit_maker(func):
"test partition or argpartition"
msg = '\nfunc %s | input %s (%s) | shape %s | n %d | axis %s | order %s\n'
msg += '\nInput array:\n%s\n'
name = func.__name__
func0 = eval('bn.slow.%s' % name)
rs = np.random.RandomState([1, 2, 3])
for i, a in enumerate(arrays(name)):
if a.ndim == 0 or a.size == 0 or a.ndim > 3:
continue
for axis in list(range(-1, a.ndim)) + [None]:
if axis is None:
nmax = a.size - 1
else:
nmax = a.shape[axis] - 1
if nmax < 1:
continue
n = rs.randint(nmax)
s0 = func0(a, n, axis)
s1 = func(a, n, axis)
if name == 'argpartition':
s0 = complete_the_argpartition(s0, a, n, axis)
s1 = complete_the_argpartition(s1, a, n, axis)
else:
s0 = complete_the_partition(s0, n, axis)
s1 = complete_the_partition(s1, n, axis)
tup = (name, 'a'+str(i), str(a.dtype), str(a.shape), n,
str(axis), array_order(a), a)
err_msg = msg % tup
assert_array_equal(s1, s0, err_msg)
def complete_the_partition(a, n, axis):
def func1d(a, n):
a[:n] = np.sort(a[:n])
a[n+1:] = np.sort(a[n+1:])
return a
a = a.copy()
ndim = a.ndim
if axis is None:
if ndim != 1:
raise ValueError("`a` must be 1d when axis is None")
axis = 0
elif axis < 0:
axis += ndim
if axis < 0:
raise ValueError("`axis` out of range")
a = np.apply_along_axis(func1d, axis, a, n)
return a
def complete_the_argpartition(index, a, n, axis):
a = a.copy()
ndim = a.ndim
if axis is None:
if index.ndim != 1:
raise ValueError("`index` must be 1d when axis is None")
axis = 0
ndim = 1
a = a.reshape(-1)
elif axis < 0:
axis += ndim
if axis < 0:
raise ValueError("`axis` out of range")
if ndim == 1:
a = a[index]
elif ndim == 2:
if axis == 0:
for i in range(a.shape[1]):
a[:, i] = a[index[:, i], i]
elif axis == 1:
for i in range(a.shape[0]):
a[i] = a[i, index[i]]
else:
raise ValueError("`axis` out of range")
elif ndim == 3:
if axis == 0:
for i in range(a.shape[1]):
for j in range(a.shape[2]):
a[:, i, j] = a[index[:, i, j], i, j]
elif axis == 1:
for i in range(a.shape[0]):
for j in range(a.shape[2]):
a[i, :, j] = a[i, index[i, :, j], j]
elif axis == 2:
for i in range(a.shape[0]):
for j in range(a.shape[1]):
a[i, j, :] = a[i, j, index[i, j, :]]
else:
raise ValueError("`axis` out of range")
else:
raise ValueError("`a.ndim` must be 1, 2, or 3")
a = complete_the_partition(a, n, axis)
return a
def test_transpose():
"partition transpose test"
a = np.arange(12).reshape(4, 3)
actual = bn.partition(a.T, 2, -1).T
desired = bn.slow.partition(a.T, 2, -1).T
assert_equal(actual, desired, 'partition transpose test')
# ---------------------------------------------------------------------------
# rankdata, nanrankdata, push
def test_nonreduce_axis():
"Test nonreduce axis functions"
funcs = [bn.rankdata, bn.nanrankdata, bn.push]
for func in funcs:
yield reduce_unit_maker, func
def test_push():
"Test push"
ns = (0, 1, 2, 3, 4, 5)
a = np.array([np.nan, 1, 2, np.nan, np.nan, np.nan, np.nan, 3, np.nan])
for n in ns:
actual = bn.push(a.copy(), n=n)
desired = bn.slow.push(a.copy(), n=n)
assert_array_equal(actual, desired, "failed on n=%s" % str(n))
# ---------------------------------------------------------------------------
# Test argument parsing
def test_arg_parsing():
"test argument parsing in nonreduce_axis"
for func in bn.get_functions('nonreduce_axis'):
name = func.__name__
if name in ('partition', 'argpartition'):
yield unit_maker_parse, func
elif name in ('push'):
yield unit_maker_parse, func
elif name in ('rankdata', 'nanrankdata'):
yield unit_maker_parse_rankdata, func
else:
fmt = "``%s` is an unknown nonreduce_axis function"
raise ValueError(fmt % name)
yield unit_maker_raises, func
def unit_maker_parse(func, decimal=5):
"test argument parsing."
name = func.__name__
func0 = eval('bn.slow.%s' % name)
a = np.array([1., 2, 3])
fmt = '\n%s' % func
fmt += '%s\n'
fmt += '\nInput array:\n%s\n' % a
actual = func(a, 1)
desired = func0(a, 1)
err_msg = fmt % "(a, 1)"
assert_array_almost_equal(actual, desired, decimal, err_msg)
actual = func(a, 1, axis=0)
desired = func0(a, 1, axis=0)
err_msg = fmt % "(a, 1, axis=0)"
assert_array_almost_equal(actual, desired, decimal, err_msg)
if name != 'push':
actual = func(a, 2, None)
desired = func0(a, 2, None)
err_msg = fmt % "(a, 2, None)"
assert_array_almost_equal(actual, desired, decimal, err_msg)
actual = func(a, 1, axis=None)
desired = func0(a, 1, axis=None)
err_msg = fmt % "(a, 1, axis=None)"
assert_array_almost_equal(actual, desired, decimal, err_msg)
# regression test: make sure len(kwargs) == 0 doesn't raise
args = (a, 1, -1)
kwargs = {}
func(*args, **kwargs)
else:
# regression test: make sure len(kwargs) == 0 doesn't raise
args = (a, 1)
kwargs = {}
func(*args, **kwargs)
def unit_maker_raises(func):
"test argument parsing raises in nonreduce_axis"
a = np.array([1., 2, 3])
assert_raises(TypeError, func)
assert_raises(TypeError, func, axis=a)
assert_raises(TypeError, func, a, axis=0, extra=0)
assert_raises(TypeError, func, a, axis=0, a=a)
if func.__name__ in ('partition', 'argpartition'):
assert_raises(TypeError, func, a, 0, 0, 0, 0, 0)
assert_raises(TypeError, func, a, axis='0')
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