1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
|
#!/bin/bash
PREFIX=${0%/*}
SEED="$1"
if [ -z "$SEED" ] ; then
SEED=77
else
shift
fi
if [ "$1" == "-c" ] ; then
make clean
shift
fi
make allall
# Args: seed, outer, inner, tbase, trand, pbase, prand
echo "Long test emphasizing building..."
perl $PREFIX/random_bowtie_tests.pl $SEED 6000 10 300 200 8 30
if [ "$?" != "0" ] ; then echo "Error!" ; exit 1 ; fi
echo "Short test emphasizing searching..."
perl $PREFIX/random_bowtie_tests.pl $SEED 1000 200 300 200 8 30
if [ "$?" != "0" ] ; then echo "Error!" ; exit 1 ; fi
echo "Short test emphasizing searching with short patterns..."
perl $PREFIX/random_bowtie_tests.pl $SEED 1000 200 300 200 6 6
if [ "$?" != "0" ] ; then echo "Error!" ; exit 1 ; fi
echo "Short test emphasizing searching with long patterns..."
perl $PREFIX/random_bowtie_tests.pl $SEED 1000 200 300 200 30 20
if [ "$?" != "0" ] ; then echo "Error!" ; exit 1 ; fi
echo "Short test emphasizing building..."
perl $PREFIX/random_bowtie_tests.pl $SEED 1200 10 300 200 8 30
if [ "$?" != "0" ] ; then echo "Error!" ; exit 1 ; fi
echo "Long test emphasizing searching..."
perl $PREFIX/random_bowtie_tests.pl $SEED 5000 200 300 200 8 30
if [ "$?" != "0" ] ; then echo "Error!" ; exit 1 ; fi
|
