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#!/usr/bin/make -f
# debian/rules for bowtie
# Andreas Tille <tille@debian.org>
# GPL
# Uncomment this to turn on verbose mode.
#export DH_VERBOSE=1
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
pkg := bowtie
%:
dh $@
override_dh_auto_build:
$(MAKE) allall
override_dh_auto_install-arch:
# remove strange byte-compyled Python code bowtie-buildc (no idea how and why it was created)
find . -name bowtie-buildc -delete
find . -name .cvsignore -delete
override_dh_install:
dh_install
if [ -d debian/tmp/usr/local/bin ] ; then \
dh_install -a usr/local/bin usr ; \
fi
override_dh_installman-arch:
help2man --name="ultrafast memory-efficient short read aligner" --no-info \
$(CURDIR)/bowtie > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/bowtie.1
help2man --name="building a colorspace index for bowtie" --no-info \
$(CURDIR)/bowtie-build > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/bowtie-build.1
help2man --name="extracts information from a bowtie index" --no-info \
$(CURDIR)/bowtie-inspect > $(CURDIR)/debian/$(pkg)/usr/share/man/man1/bowtie-inspect.1
override_dh_compress:
dh_compress -X.ebwt
# Fix bowtie-examples access mode for files in examples/
override_dh_fixperms-indep:
dh_fixperms
chmod 644 debian/bowtie-examples/usr/share/doc/bowtie/examples/indexes/*
# Following line is not needed because gzipped genome/ (by dh_compress) is always 644.
# chmod 644 debian/bowtie-examples/usr/share/doc/bowtie/examples/genomes/*
override_dh_missing-indep:
dh_missing -i --list-missing
override_dh_auto_clean:
rm -f .bowtie*
rm -f .simple*
rm -rf __pycache__
dh_auto_clean
override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
unset LD_PRELOAD && make simple-test
ln -s debian/tests
unset LD_PRELOAD && sh debian/tests/run-unit-test test_at_build_time
rm -f tests examples[0-9].out
endif
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