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<title>Bowtie: An ultrafast, memory-efficient short read aligner</title>
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<strong>Bowtie</strong> is an ultrafast, memory-efficient
short read aligner. It aligns short DNA sequences (reads) to the
human genome at a rate of over 25 million 35-bp reads per hour. Bowtie
indexes the genome with a Burrows-Wheeler index to keep its memory footprint
small: typically about 2.2 GB for the human genome (2.9 GB for paired-end).
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