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Source: bowtie2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Alexandre Mestiashvili <mestia@debian.org>,
Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper (>= 11),
help2man,
libtbb-dev,
python,
liblocal-lib-perl,
libtest-deep-perl,
libclone-perl,
zlib1g-dev
Standards-Version: 4.2.1
Vcs-Browser: https://salsa.debian.org/med-team/bowtie2
Vcs-Git: https://salsa.debian.org/med-team/bowtie2.git
Homepage: http://bowtie-bio.sourceforge.net/bowtie2
Package: bowtie2
Architecture: amd64 kfreebsd-amd64
Depends: python,
${misc:Depends},
${shlibs:Depends}
Suggests: bowtie2-examples
Description: ultrafast memory-efficient short read aligner
is an ultrafast and memory-efficient tool for aligning sequencing reads
to long reference sequences. It is particularly good at aligning reads
of about 50 up to 100s or 1,000s of characters, and particularly good
at aligning to relatively long (e.g. mammalian) genomes.
.
Bowtie 2 indexes the genome with an FM Index to keep its memory footprint
small: for the human genome, its memory footprint is typically
around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes
Package: bowtie2-examples
Architecture: all
Depends: ${misc:Depends}
Recommends: bowtie2
Enhances: bowtie2
Description: Examples for bowtie2
An ultrafast and memory-efficient tool for aligning sequencing reads
to long reference sequences. It is particularly good at aligning reads
of about 50 up to 100s or 1,000s of characters, and particularly good
at aligning to relatively long (e.g. mammalian) genomes.
.
Bowtie 2 indexes the genome with an FM Index to keep its memory footprint
small: for the human genome, its memory footprint is typically
around 3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes
.
This package provides some example data to work with bowtie2.
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