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#!/usr/bin/make -f
pkg := bowtie2
export DEB_BUILD_MAINT_OPTIONS = hardening=+all
LDFLAGS := $(shell dpkg-buildflags --get LDFLAGS)
export LANG=C
export LC_ALL=C.UTF-8
include /usr/share/dpkg/architecture.mk
export DEB_CFLAGS_MAINT_APPEND += -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3
export DEB_CXXFLAGS_MAINT_APPEND += -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3
EXTRA_OPTIONS =
ifneq ($(DEB_TARGET_ARCH),amd64)
EXTRA_OPTIONS += NO_TBB=1 POPCNT_CAPABILITY=
else
EXTRA_OPTIONS += POPCNT_CAPABILITY=1
endif
export EXTRA_OPTIONS
%:
dh $@
override_dh_auto_build:
LD_PRELOAD= dh_auto_build -- EXTRA_FLAGS="-std=c++98 $(LDFLAGS)" $(EXTRA_OPTIONS) HOSTNAME=reproducible-hostname
override_dh_auto_test:
ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))
LD_PRELOAD= $(MAKE) EXTRA_FLAGS="-std=c++98 $(LDFLAGS)" $(EXTRA_OPTIONS) \
bowtie2-build-s-debug \
bowtie2-build-l-debug \
bowtie2-align-s-debug \
bowtie2-align-l-debug \
bowtie2-inspect-s-debug \
bowtie2-inspect-l-debug
LD_PRELOAD= make -j1 test
endif
override_dh_auto_install:
dh_auto_install
override_dh_install:
dh_install -X.gitignore
override_dh_installman:
mkdir -p $(CURDIR)/debian/$(pkg)/usr/share/man/man1/
debian/help2man-wrapper $(pkg) "wrapper for $(pkg)-align-*"
debian/help2man-wrapper $(pkg)-build "wrapper for $(pkg)-build-*"
debian/help2man-wrapper $(pkg)-build-l "building a colorspace index for $(pkg)"
debian/help2man-wrapper $(pkg)-build-s "building a colorspace index for $(pkg)"
debian/help2man-wrapper $(pkg)-inspect "wrapper for $(pkg)-inspect-* index"
debian/help2man-wrapper $(pkg)-inspect-l "extracts information from a $(pkg) index"
debian/help2man-wrapper $(pkg)-inspect-s "extracts information from a $(pkg) index"
debian/help2man-wrapper $(pkg)-align-l "ultrafast and memory-efficient backend tool for aligning sequencing reads to long reference sequences"
debian/help2man-wrapper $(pkg)-align-s "ultrafast and memory-efficient backend tool for aligning sequencing reads to long reference sequences"
rm -f $(CURDIR)/debian/$(pkg)/usr/bin/bowtie2-buildc
override_dh_installchangelogs:
dh_installchangelogs NEWS
override_dh_gencontrol:
dh_gencontrol -- -Vsimde:Built-Using="$(shell dpkg-query -f '$${source:Package} (= $${source:Version}), ' -W "libsimde-dev")"
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