File: Consense.bpp

package info (click to toggle)
bppsuite 2.4.1-8
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid
  • size: 2,116 kB
  • sloc: cpp: 3,867; sh: 65; makefile: 5
file content (15 lines) | stat: -rw-r--r-- 372 bytes parent folder | download | duplicates (7)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
input.trees.file = ../Data/treeList.dnd
input.trees.format = Newick
# [input|consensus]
tree = Input
input.tree.file = boot.nx #../Data/tree.dnd
input.tree.format = Nexus #Newick
# Alternatively:
# tree = Consensus(threshold=0.5)
# 0 = fully resolved
# 0.5 = majority rule
# 1 = strict
# or any intermediate value...
output.tree.file = boot.nx
output.tree.format = Nexus