File: examples.txt

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.. currentmodule:: brian

Examples
========

These examples cover some basic topics in writing Brian scripts in Python. The
complete source code for the examples is available in the examples folder
in the extras package.

.. EXAMPLES TOCTREE

.. toctree::
   :maxdepth: 1


.. _examples-electrophysiology:

electrophysiology
-----------------

.. toctree::
   :maxdepth: 1

   examples-electrophysiology_voltageclamp
   examples-electrophysiology_compensation_ex3_quality
   examples-electrophysiology_compensation_ex2_spikes
   examples-electrophysiology_threshold_analysis
   examples-electrophysiology_AEC
   examples-electrophysiology_SEVC
   examples-electrophysiology_bridge
   examples-electrophysiology_DCC
   examples-electrophysiology_compensation_ex1

.. _examples-misc:

misc
----

.. toctree::
   :maxdepth: 1

   examples-misc_cable
   examples-misc_stopping
   examples-misc_topographic_map2
   examples-misc_transient_sync
   examples-misc_pulsepacket
   examples-misc_mirollo_strogatz
   examples-misc_CUBA
   examples-misc_current_clamp
   examples-misc_phase_locking
   examples-misc_correlated_inputs2
   examples-misc_rate_model
   examples-misc_timed_array
   examples-misc_noisy_ring
   examples-misc_delays
   examples-misc_after_potential
   examples-misc_named_threshold
   examples-misc_ring
   examples-misc_I-F_curve2
   examples-misc_adaptive_threshold
   examples-misc_spike_triggered_average
   examples-misc_leaky_if
   examples-misc_I-F_curve
   examples-misc_heterogeneous_delays
   examples-misc_spikes_io
   examples-misc_COBAHH
   examples-misc_poissongroup
   examples-misc_two_neurons
   examples-misc_multipleclocks
   examples-misc_HodgkinHuxley
   examples-misc_stim2d
   examples-misc_reliability
   examples-misc_minimalexample
   examples-misc_using_classes
   examples-misc_poisson
   examples-misc_adaptive
   examples-misc_van_rossum_metric
   examples-misc_realtime_plotting
   examples-misc_topographic_map
   examples-misc_if
   examples-misc_remotecontrolclient
   examples-misc_linked_var
   examples-misc_gap_junctions
   examples-misc_remotecontrolserver
   examples-misc_non_reliability
   examples-misc_correlated_inputs
   examples-misc_expIF_network
   examples-misc_COBA

.. _examples-audition:

audition
--------

.. toctree::
   :maxdepth: 1

   examples-audition_licklider
   examples-audition_filterbank
   examples-audition_jeffress

.. _examples-synapses:

synapses
--------

.. toctree::
   :maxdepth: 1

   examples-synapses_licklider
   examples-synapses_two_synapses
   examples-synapses_transient_sync
   examples-synapses_synapse_construction
   examples-synapses_CUBA
   examples-synapses_poisson_synapses
   examples-synapses_noisy_ring
   examples-synapses_barrelcortex
   examples-synapses_short_term_plasticity2
   examples-synapses_one_synapse
   examples-synapses_one_synapse_bis
   examples-synapses_STDP1_bis
   examples-synapses_delayed_stdp
   examples-synapses_nonlinear_synapses
   examples-synapses_STDP1
   examples-synapses_short_term_plasticity
   examples-synapses_gapjunctions
   examples-synapses_jeffress
   examples-synapses_probabilistic_synapses2
   examples-synapses_Diesmann_et_al_1999
   examples-synapses_multiple_delays
   examples-synapses_probabilistic_synapses
   examples-synapses_weightmonitor

.. _examples-plasticity:

plasticity
----------

.. toctree::
   :maxdepth: 1

   examples-plasticity_STDP2
   examples-plasticity_short_term_plasticity2
   examples-plasticity_STDP1
   examples-plasticity_short_term_plasticity

.. _examples-interface:

interface
---------

.. toctree::
   :maxdepth: 1

   examples-interface_interface

.. _examples-twister:

twister
-------

.. toctree::
   :maxdepth: 1

   examples-twister_PeterDiehl
   examples-twister_FriedemannZenke
   examples-twister_QuentinPauluis
   examples-twister_anonymous
   examples-twister_PierreYger
   examples-twister_MicheleGiugliano

.. _examples-multiprocessing:

multiprocessing
---------------

.. toctree::
   :maxdepth: 1

   examples-multiprocessing_taskfarm
   examples-multiprocessing_multiple_runs_simple
   examples-multiprocessing_multiple_runs_with_gui

.. _examples-hears:

hears
-----

.. toctree::
   :maxdepth: 1

   examples-hears_online_computation
   examples-hears_sound_localisation_model
   examples-hears_dcgc
   examples-hears_butterworth
   examples-hears_time_varying_filter2
   examples-hears_log_gammachirp
   examples-hears_drnl
   examples-hears_simple_anf
   examples-hears_time_varying_filter1
   examples-hears_gammatone
   examples-hears_cochlear_models
   examples-hears_approximate_gammatone
   examples-hears_artificial_vowels
   examples-hears_linear_gammachirp
   examples-hears_IIRfilterbank
   examples-hears_ircam_hrtf
   examples-hears_cochleagram
   examples-hears_sounds

.. _examples-hears-tan_carney_2003:

hears/tan_carney_2003
---------------------

.. toctree::
   :maxdepth: 1

   examples-hears-tan_carney_2003_tan_carney_Fig7
   examples-hears-tan_carney_2003_tan_carney_simple_test
   examples-hears-tan_carney_2003_tan_carney_Fig11

.. _examples-modelfitting:

modelfitting
------------

.. toctree::
   :maxdepth: 1

   examples-modelfitting_modelfitting
   examples-modelfitting_modelfitting_groups
   examples-modelfitting_modelfitting_machines

.. _examples-frompapers:

frompapers
----------

.. toctree::
   :maxdepth: 1

   examples-frompapers_Touboul_Brette_2008
   examples-frompapers_Platkiewicz_Brette_2011
   examples-frompapers_Brette_2004
   examples-frompapers_Plakiewicz_Brette_2010
   examples-frompapers_Guetig_Sompolinsky_2009
   examples-frompapers_Diesmann_et_al_1999_longer
   examples-frompapers_Kremer_et_al_2011
   examples-frompapers_Rossant_et_al_2011bis
   examples-frompapers_Rossant_et_al_2011
   examples-frompapers_Brunel_Hakim_1999
   examples-frompapers_Vogels_et_al_2011
   examples-frompapers_Rothman_Manis_2003
   examples-frompapers_Brette_Guigon_2003
   examples-frompapers_Sturzl_et_al_2000
   examples-frompapers_Wang_Buszaki_1996
   examples-frompapers_Goodman_Brette_2010
   examples-frompapers_Muller_et_al_2011
   examples-frompapers_Diesmann_et_al_1999
   examples-frompapers_Brette_Gerstner_2005

.. _examples-frompapers-computing with neural synchrony-coincidence detection and synchrony:

frompapers/computing with neural synchrony/coincidence detection and synchrony
------------------------------------------------------------------------------

.. toctree::
   :maxdepth: 1

   examples-frompapers-computing with neural synchrony-coincidence detection and synchrony_Fig6_shared_variability
   examples-frompapers-computing with neural synchrony-coincidence detection and synchrony_Fig1F_ROC
   examples-frompapers-computing with neural synchrony-coincidence detection and synchrony_Fig5D_reproducibility
   examples-frompapers-computing with neural synchrony-coincidence detection and synchrony_Fig5E_precision_reliability
   examples-frompapers-computing with neural synchrony-coincidence detection and synchrony_Fig1C

.. _examples-frompapers-computing with neural synchrony-hearing:

frompapers/computing with neural synchrony/hearing
--------------------------------------------------

.. toctree::
   :maxdepth: 1

   examples-frompapers-computing with neural synchrony-hearing_Fig12A_Goodman_Brette_2010
   examples-frompapers-computing with neural synchrony-hearing_Fig7A_Jeffress
   examples-frompapers-computing with neural synchrony-hearing_Fig7B_Licklider

.. _examples-frompapers-computing with neural synchrony-duration selectivity:

frompapers/computing with neural synchrony/duration selectivity
---------------------------------------------------------------

.. toctree::
   :maxdepth: 1

   examples-frompapers-computing with neural synchrony-duration selectivity_params
   examples-frompapers-computing with neural synchrony-duration selectivity_Fig2C_decoding_synchrony
   examples-frompapers-computing with neural synchrony-duration selectivity_Fig1A_rebound_neurons
   examples-frompapers-computing with neural synchrony-duration selectivity_Fig4_duration_stdp
   examples-frompapers-computing with neural synchrony-duration selectivity_Fig1D_duration_selectivity
   examples-frompapers-computing with neural synchrony-duration selectivity_Fig2A_synchrony_partition

.. _examples-frompapers-computing with neural synchrony-olfaction:

frompapers/computing with neural synchrony/olfaction
----------------------------------------------------

.. toctree::
   :maxdepth: 1

   examples-frompapers-computing with neural synchrony-olfaction_params
   examples-frompapers-computing with neural synchrony-olfaction_Fig11B_olfaction_stdp_learning
   examples-frompapers-computing with neural synchrony-olfaction_Fig9B_olfaction
   examples-frompapers-computing with neural synchrony-olfaction_Fig11B_olfaction_stdp_testing