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Source: brig
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 12),
default-jdk,
javahelper,
ant,
libjdom1-java,
libswing-layout-java,
cgview,
ncbi-blast+-legacy,
ncbi-blast+
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/brig
Vcs-Git: https://salsa.debian.org/med-team/brig.git
Homepage: http://sourceforge.net/projects/brig/
Package: brig
Architecture: any
Depends: ${java:Depends},
${misc:Depends}
Description: BLAST Ring Image Generator
BRIG can display circular comparisons between a large number of genomes,
with a focus on handling genome assembly data.
* Images show similarity between a central reference sequence and other
sequences as concentric rings.
* BRIG will perform all BLAST comparisons and file parsing automatically
via a simple GUI.
* Contig boundaries and read coverage can be displayed for draft genomes;
customized graphs and annotations can be displayed.
* Using a user-defined set of genes as input, BRIG can display gene
presence, absence, truncation or sequence variation in a set of
complete genomes, draft genomes or even raw, unassembled sequence data.
* BRIG also accepts SAM-formatted read-mapping files enabling genomic
regions present in unassembled sequence data from multiple samples to
be compared simultaneously
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