File: denfmt_read.c

package info (click to toggle)
c2x 2.35a%2Bds-1
  • links: PTS, VCS
  • area: main
  • in suites: bullseye
  • size: 1,020 kB
  • sloc: ansic: 19,816; makefile: 54; sh: 1
file content (244 lines) | stat: -rw-r--r-- 6,354 bytes parent folder | download
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
/* Read a single data set from a CASTEP .den_fmt (or .pot_fmt) file 
 *
 * The format seems to be undocumented,
 * so it is hard to work out how it should be parsed...
 */

/* Copyright (c) 2017-2019 MJ Rutter 
 * 
 * This program is free software; you can redistribute it and/or
 * modify it under the terms of the GNU General Public License as
 * published by the Free Software Foundation, either version 3
 * of the Licence, or (at your option) any later version.
 * 
 * This program is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU General Public License for more details.
 * 
 * You should have received a copy of the GNU General Public License
 * along with this program; if not, see http://www.gnu.org/licenses/
 */ 

#include<stdio.h>
#include<stdlib.h> /* malloc */
#include<string.h>

#include "c2xsf.h"

#define LINE_SIZE 120

void denfmt_read(FILE* infile, struct unit_cell *c, struct contents *m,
                 struct grid *gptr, struct es *elect, int rescale){
  static char buffer[LINE_SIZE+1];
  char *spin_range,*filename;
  int i,nx,ny,nz,ngx,ngy,ngz,nspins;
  double x,x2,scale,*data2;
  struct grid *gptr2;

  if (debug>2) fprintf(stderr,"denfmt_read called\n");

  data2=NULL;
  spin_range=elect->spin_range;

  filename=dict_get(m->dict,"in_file");
  i=strlen(filename);
  if ((i>7)&&(!strcmp(filename+i-7,"den_fmt"))){
    if ((flags&CHDEN)&&(flags&SPINDEN)) spin_range="-";
   else if (flags&SPINDEN) spin_range="1";
    else spin_range="0";
  }
  
  while(fgets(buffer,LINE_SIZE,infile))
    if (strstr(buffer,"BEGIN header")) break;

  if (!strstr(buffer,"BEGIN header")) error_exit("BEGIN header not found");
  
  while(fgets(buffer,LINE_SIZE,infile))
    if (strstr(buffer,"Real Lattice")) break;

  if (!strstr(buffer,"Real Lattice")) error_exit("Real Lattice not found");
  
  if (!(c->basis=malloc(9*sizeof(double))))
    error_exit("Malloc error in denfmt_read for c->basis");
 
  for(i=0;i<3;i++){
    fgets(buffer,LINE_SIZE,infile);
    if (sscanf(buffer,"%lf %lf %lf",&(c->basis[i][0]),
               &(c->basis[i][1]),&(c->basis[i][2]))!=3)
      error_exit("Scan error in lattice description");
  }
  real2rec(c);
   
  fgets(buffer,LINE_SIZE,infile);
  fgets(buffer,LINE_SIZE,infile);
  if (sscanf(buffer,"%d",&nspins)!=1)
    error_exit("Scan error for nspins");

  if ((nspins!=1)&&(nspins!=2)){
    fprintf(stderr,"Unexpected value for nspins, assuming one\n");
    nspins=1;
  }
  
  fgets(buffer,LINE_SIZE,infile);
  if (sscanf(buffer,"%d %d %d",&ngx,&ngy,&ngz)!=3)
    error_exit("Scan error in grid dimensions");

  if (debug>1) fprintf(stderr,"denfmt read grid size to be %dx%dx%d\n",
                       ngx,ngy,ngz);

  if (gptr->next) gptr=gptr->next;
  gptr->next=malloc(sizeof(struct grid));
  if (!gptr->next) error_exit("Malloc error for struct grid");
  gptr->next->next=NULL;
  gptr->next->data=NULL;
  gptr->size[0]=ngx;
  gptr->size[1]=ngy;
  gptr->size[2]=ngz;

  if(!(gptr->data=malloc(ngx*ngy*ngz*sizeof(double))))
    error_exit("Malloc error in denfmt_read for grid data");

  if (nspins==2){
    if(!(data2=malloc(ngx*ngy*ngz*sizeof(double))))
      error_exit("Malloc error in denfmt_read for grid data");
  }
  
  while(fgets(buffer,LINE_SIZE,infile))
    if (strstr(buffer,"END header")) break;

  if (!strstr(buffer,"END header")) error_exit("END header not found");

  fgets(buffer,LINE_SIZE,infile);

  while(fgets(buffer,LINE_SIZE,infile)){
    if(sscanf(buffer,"%d %d %d",&nx,&ny,&nz)==3) break;
  }

  scale=1;
  if (!(flags&RAW)){
    if (rescale==1)
      scale=1/c->vol;
    else if (rescale==2)
      scale=H_eV;
  }
  
  for(i=0;i<ngx*ngy*ngz;i++){
    if (i) if (!fgets(buffer,LINE_SIZE,infile)) break;
    if (nspins==2){
      if (sscanf(buffer,"%d %d %d %lf %lf",&nx,&ny,&nz,&x,&x2)!=5){
	fprintf(stderr,"Parse error for data item %d\n",i);
	exit(1);
      }
    }
    else{
      if (sscanf(buffer,"%d %d %d %lf",&nx,&ny,&nz,&x)!=4){
	fprintf(stderr,"Parse error for data item %d\n",i);
	exit(1);
      }
    }
    if ((nx>ngx)||(ny>ngy)||(nz>ngz)){
      fprintf(stderr,"Found point (%d,%d,%d) but grid is %dx%dx%d\n",
              nx,ny,nz,ngx,ngy,ngz);
      exit(1);
    }
    nx--;ny--;nz--;
    gptr->data[nx*ngy*ngz+ny*ngz+nz]=x*scale;
    if (nspins==2)
      data2[nx*ngy*ngz+ny*ngz+nz]=x2*scale;
  }

  if (i!=ngx*ngy*ngz) error_exit("Too few data points read in denfmt_read");

  if (nspins==2){
    if (inrange(0,spin_range)){
      if (rescale==1){
	if (flags&RAW)
	  gptr->name="Density_raw";
	else
	  gptr->name="Density";
      }
      else if (rescale==2){
	if (flags&RAW)
	  gptr->name="Potential_raw_s0";
	else
	  gptr->name="Potential_s0";
      }
      else if (rescale==1)
	gptr->name="ELF_s0";
      else
	gptr->name="Unknown_s0";
    
      if (inrange(1,spin_range)){
	gptr2=gptr->next;
	gptr2->next=malloc(sizeof(struct grid));
	if (!gptr2->next) error_exit("Malloc error for struct grid");
	gptr2->next->next=NULL;
	gptr2->next->data=NULL;
	gptr2->size[0]=ngx;
	gptr2->size[1]=ngy;
	gptr2->size[2]=ngz;
	gptr2->data=data2;
	if (rescale==1){
	  if (flags&RAW)
	    gptr2->name="Spin_raw";
	  else
	    gptr2->name="Spin";
	}
	else if (rescale==2){
	  if (flags&RAW)
	    gptr2->name="Potential_raw_s1";
	  else
	    gptr2->name="Potential_s1";
	}
	else if (rescale==1)
	  gptr2->name="ELF_s1";
	else
	  gptr2->name="Unknown_s1";
      }
      else free(data2);
    }
    else{ /* if (inrange(0,spin_range) */
      if (inrange(1,spin_range)){
	free(gptr->data);
	gptr->data=data2;
	if (rescale==1){
	  if (flags&RAW)
	    gptr->name="Spin_raw";
	  else
	    gptr->name="Spin";
	}
	else if (rescale==2){
	  if (flags&RAW)
	    gptr->name="Potential_raw_s1";
	  else
	    gptr->name="Potential_s1";
	}
	else if (rescale==1)
	  gptr->name="ELF_s1";
	else
	  gptr->name="Unknown_s1";
      }
      else error_exit("Spin range excludes 0 and 1");
    }
  } /* if spins==2 */
  else{
    if (rescale==1){
      if (flags&RAW)
	gptr->name="Density_raw";
      else
	gptr->name="Density";
    }
    else if (rescale==2){
      if (flags&RAW)
	gptr->name="Potential_raw";
      else
	gptr->name="Potential";
    }
    else if (rescale==1)
      gptr->name="ELF";
    else
      gptr->name="Unknown";
  }

}