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/* Read a CASTEP .bands file. Also a .cell file if found */
/* Code for Siesta bands file too */
/* MJR (c) 2024 */
#include<stdio.h>
#include<stdlib.h> /* malloc */
#include<string.h>
#include<ctype.h>
#include "c2xsf.h"
#define LINE_SIZE 200
void cell_read(FILE* in, struct unit_cell *c, struct contents *m,
struct kpts *kp, struct symmetry *s);
static void siesta_bands_read(FILE* infile, struct unit_cell *c,
struct contents *m, struct kpts *k,
struct symmetry *s,struct es *e);
void bands_read(FILE* infile, struct unit_cell *c, struct contents *m,
struct kpts *k, struct symmetry *s,struct es *e){
int i,j,itmp,itmp2,first_line;
int ik,nb,ns;
double dtmp,dtmp2;
char buffer[LINE_SIZE+1],*cptr,*newfile;
FILE *f;
struct kpts kdummy;
/* Read header */
first_line=1;
while(1){
if (!fgets(buffer,LINE_SIZE,infile)) error_exit("Unexpected EOF");
if (first_line){
if (sscanf(buffer,"%lf",&dtmp)==1){
e->e_fermi=malloc(sizeof(double));
if (!e->e_fermi) error_exit("malloc error");
*(e->e_fermi)=dtmp;
siesta_bands_read(infile, c, m, k, s, e);
return;
}
}
cptr=buffer;
while(isspace(*cptr)) cptr++;
if (*cptr==0) continue;
if (*cptr=='#') continue;
if (!strncasecmp(cptr,"Number of k-points",18)){
if (sscanf(cptr+18,"%d",&itmp)!=1)
error_exit("Error parsing number of kpoints");
k->n=itmp;
k->kpts=malloc(itmp*sizeof(struct atom));
if (!k->kpts) error_exit("Malloc error for kpoints");
init_atoms(k->kpts,itmp);
}
else if (!strncasecmp(cptr,"Number of spin components",25)){
if (sscanf(cptr+25,"%d",&itmp)!=1)
error_exit("Error parsing number of spins");
if ((itmp<1)||(itmp>2))
error_exit("Error, number of spins not one or two");
e->nspins=itmp;
e->nbspins=itmp;
}
else if (!strncasecmp(cptr,"Number of electrons",19)){
if (e->nspins==1){
if (sscanf(cptr+19,"%lf",&(e->nel))!=1)
error_exit("Error parsing number of electrons");
}
else if (e->nspins==2){
if (sscanf(cptr+19,"%lf %lf",&dtmp,&dtmp2)!=2)
error_exit("Error parsing number of electrons");
e->nel=dtmp+dtmp2;
e->nup_minus_down=dtmp-dtmp2;
}
else
error_exit("Found number of electrons, but nspins not set to 1 or 2");
}
else if (!strncasecmp(cptr,"Number of eigenvalues",21)){
if (e->nspins==1){
if (sscanf(cptr+21,"%d",&(e->nbands))!=1)
error_exit("Error parsing number of bands");
}
else if (e->nspins==2){
if (sscanf(cptr+21,"%d %d",&itmp,&itmp2)!=2)
error_exit("Error parsing number of bands");
if (itmp!=itmp2)
error_exit("Confused: number of bands differ for different spins");
e->nbands=itmp;
}
}
else if (!strncasecmp(cptr,"Fermi energy (in atomic units)",30)){
e->e_fermi=malloc(sizeof(double));
if (!e->e_fermi) error_exit("malloc error for a double!");
if (sscanf(cptr+30,"%lf",e->e_fermi)!=1)
error_exit("Error parsing Fermi energy");
*(e->e_fermi)*=H_eV;
}
else if (!strncasecmp(cptr,"Fermi energies (in atomic units)",32)){
e->e_fermi=malloc(sizeof(double));
if (!e->e_fermi) error_exit("malloc error for a double!");
if (e->nspins==2){
if (sscanf(cptr+32,"%lf %lf",&dtmp,&dtmp2)!=2)
error_exit("Error parsing Fermi energies");
*(e->e_fermi)=0.5*(dtmp+dtmp2)*H_eV;
}
else
error_exit("Found Fermi energies, but nspins not set to 1 or 2");
}
else if (!strncasecmp(cptr,"Unit cell vectors",17)){
c->basis=malloc(9*sizeof(double));
if (!c->basis) error_exit("Malloc error for basis");
for(i=0;i<3;i++){
if (!fgets(buffer,LINE_SIZE,infile)) error_exit("Unexpected EOF");
if (sscanf(buffer,"%lf %lf %lf",c->basis[i],
c->basis[i]+1,c->basis[i]+2)!=3)
error_exit("Error parsing basis");
for(j=0;j<3;j++)
c->basis[i][j]*=BOHR;
}
}
else if (!strncasecmp(cptr,"K-point",7)) break;
else fprintf(stderr,"Ignoring: %s",cptr);
first_line=0;
}
if (!c->basis)
error_exit("Basis not found");
real2rec(c);
itmp=e->nbands*e->nspins*k->n;
if (itmp==0) error_exit("One of nkpt, nbands and kspins is zero!");
e->eval=malloc(itmp*sizeof(double));
if (!e->eval) error_exit("Malloc error for eigenvalues");
/* Read k-points */
for(i=0;i<k->n;i++){
if (i!=0)
if (!fgets(buffer,LINE_SIZE,infile)) error_exit("Unexpected EOF");
if (sscanf(buffer,"K-point %d%n",&ik,&itmp)!=1)
error_exit("Error parsing kpoint line");
if ((ik<1)||(ik>k->n))
error_exit("Unexpected kpoint number");
ik--;
if (sscanf(buffer+itmp,"%lf %lf %lf %lf",
k->kpts[ik].frac,k->kpts[ik].frac+1,k->kpts[ik].frac+2,
&(k->kpts[ik].wt))!=4)
error_exit("Error parsing kpoint line");
for(ns=0;ns<e->nspins;ns++){
if (!fgets(buffer,LINE_SIZE,infile)) error_exit("Unexpected EOF");
if (sscanf(buffer,"Spin component %d",&itmp)!=1)
error_exit("Error parsing spin component line");
if (itmp!=ns+1)
error_exit("Unexpected spin component number");
for(nb=0;nb<e->nbands;nb++){
if (!fgets(buffer,LINE_SIZE,infile)) error_exit("Unexpected EOF");
if (sscanf(buffer,"%lf",&dtmp)!=1)
error_exit("Error parsing eigenvalue");
e->eval[nb+e->nbands*ns+e->nbands*e->nspins*ik]=dtmp*H_eV;
}
}
}
bands_select(m,k,e);
/* See if we can find a .cell file */
if (dict_get(m->dict,"in_file")){
newfile=strrsubs(dict_get(m->dict,"in_file"),"bands","cell");
if (newfile){
f=fopen(newfile,"r");
if (f){
fprintf(stderr,"Additionally reading %s\n",newfile);
init_kpts(&kdummy);
cell_read(f,c,m,&kdummy,s);
fclose(f);
if (kdummy.break_n){
k->breaks=kdummy.breaks;
k->break_n=kdummy.break_n;
kdummy.breaks=NULL;
kdummy.break_n=0;
}
free_kpts(&kdummy);
}
}
free(newfile);
}
}
/* Assume first line of file already read */
static void siesta_bands_read(FILE* infile, struct unit_cell *c,
struct contents *m, struct kpts *k,
struct symmetry *s,struct es *e){
int nbands,nspins,nkpts;
int ik,nb,is,off,i,j;
char buffer[LINE_SIZE+1],*cptr,*newfile;
double dtmp,path;
FILE *f;
struct kpts kdummy;
if (debug) fprintf(stderr,"Reading Siesta bands file\n");
if (!fgets(buffer,LINE_SIZE,infile)) error_exit("Unexpected EOF");
dtmp=0;
sscanf(buffer,"%lf",&dtmp);
if (dtmp==0)
if (!fgets(buffer,LINE_SIZE,infile)) error_exit("Unexpected EOF");
if (!fgets(buffer,LINE_SIZE,infile)) error_exit("Unexpected EOF");
if (sscanf(buffer,"%d %d %d",&nbands,&nspins,&nkpts)!=3)
error_exit("Error parsing third line");
if (dtmp==0){
fprintf(stderr,"Siesta bands file contains lines\n");
e->path_eval=malloc(nbands*nspins*nkpts*sizeof(double));
if (!e->path_eval) error_exit("malloc error for evals");
e->path_nbands=nbands;
k->path_nkpt=nkpts;
e->nspins=nspins;
e->nbspins=nspins;
path=-1;
for(ik=0;ik<nkpts;ik++){
if (!fgets(buffer,LINE_SIZE,infile)) error_exit("Unexpected EOF");
if (sscanf(buffer,"%lf %n",&dtmp,&off)!=1)
error_exit("parse error for kpt");
if (dtmp<path)
error_exit("path moves backwards");
path=dtmp;
cptr=buffer+off;
for(nb=0;nb<nbands;nb++){
for(is=0;is<nspins;is++){
if (sscanf(cptr,"%lf%n",&dtmp,&off)!=1){
if (!fgets(buffer,LINE_SIZE,infile)) error_exit("Unexpected EOF");
cptr=buffer;
if (sscanf(cptr,"%lf%n",&dtmp,&off)!=1) error_exit("Parse error");
}
e->path_eval[nb+nbands*is+nbands*nspins*ik]=dtmp;
cptr+=off;
}
}
}
if (debug) fprintf(stderr,"Read %d bands, %d spins, %d kpts\n",
nbands,nspins,nkpts);
bands_select(m,k,e);
return;
}
e->eval=malloc(nbands*nspins*nkpts*sizeof(double));
e->nbands=nbands;
e->nspins=nspins;
e->nbspins=nspins;
if (!e->eval) error_exit("malloc error for evals");
k->n=nkpts;
k->kpts=malloc(nkpts*sizeof(struct atom));
if (!k->kpts) error_exit("malloc error for kpoints");
for(ik=0;ik<nkpts;ik++){
if (!fgets(buffer,LINE_SIZE,infile)) error_exit("Unexpected EOF");
if (sscanf(buffer,"%lf %lf %lf %n",k->kpts[ik].abs,k->kpts[ik].abs+1,
k->kpts[ik].abs+2,&off)!=3)
error_exit("parse error for kpt");
cptr=buffer+off;
for(nb=0;nb<nbands;nb++){
for(is=0;is<nspins;is++){
if (sscanf(cptr,"%lf%n",&dtmp,&off)!=1){
if (!fgets(buffer,LINE_SIZE,infile)) error_exit("Unexpected EOF");
cptr=buffer;
if (sscanf(cptr,"%lf%n",&dtmp,&off)!=1) error_exit("Parse error");
}
e->eval[nb+nbands*is+nbands*nspins*ik]=dtmp;
cptr+=off;
}
}
}
if (debug) fprintf(stderr,"Read %d bands, %d spins, %d kpts\n",
nbands,nspins,nkpts);
if (debug) print_bandwidths(e,k);
bands_select(m,k,e);
/* See if we can find a .XV file */
if(!c->basis){
if (dict_get(m->dict,"in_file")){
newfile=strrsubs(dict_get(m->dict,"in_file"),"bands","XV");
if (newfile){
f=fopen(newfile,"r");
if (f){
fprintf(stderr,"Additionally reading %s\n",newfile);
xv_read(f,c,m);
fclose(f);
}
else{
free(newfile);
newfile=strrsubs(dict_get(m->dict,"in_file"),"bands","fdf");
if (newfile){
f=fopen(newfile,"r");
if (f){
fprintf(stderr,"Additionally reading %s\n",newfile);
init_kpts(&kdummy);
fdf_read(f,c,m,&kdummy,e);
fclose(f);
free_kpts(&kdummy);
}
}
}
}
free(newfile);
}
} /* if (!c->basis) */
if (!c->basis)
error_exit("Unable to find basis");
/* kpoint co-ordinates are absolute, and in reciprocal Bohr */
for(i=0;i<k->n;i++)
for(j=0;j<3;j++)
k->kpts[i].abs[j]/=(2*M_PI*BOHR);
addfrac(k->kpts,k->n,c->basis);
if (tol==1e-4){
fprintf(stderr,"Resetting tol to 5e-4 due to low precision in input\n");
tol=5e-4;
}
}
void bands_select(struct contents *m, struct kpts *k, struct es *e){
int ik,is,ib,nk,ns,nb,path=0;
int nkpts,nbands,nspins,kn,enb;
double *eval,*occ;
struct atom *kpt;
if ((!e->band_range)||(!e->kpt_range)||(!e->spin_range))
return; /* Nothing can be done */
if ((!strcmp(e->band_range,"-"))&&(!strcmp(e->kpt_range,"-"))&&
(!strcmp(e->spin_range,"-"))) return; /* Nothing to do */
if (e->path_nbands){
path=1;
kn=k->path_nkpt;
enb=e->path_nbands;
fprintf(stderr,"Selecting path bands\n");
}
else{
kn=k->n;
enb=e->nbands;
}
nkpts=0;
for(ik=0;ik<kn;ik++)
if (inrange(ik+1,e->kpt_range)) nkpts++;
nspins=0;
for(is=0;is<e->nspins;is++)
if (inrange(is,e->spin_range)) nspins++;
nbands=0;
for(ib=0;ib<enb;ib++)
if (inrange(ib+1,e->band_range)) nbands++;
if ((nbands==enb)&&(nspins==e->nspins)&&(nkpts==kn)) return;
if (debug) fprintf(stderr,"Selecting %d bands from %d, %d spins from %d,"
" %d k-points from %d\n",nbands,enb,
nspins,e->nspins,nkpts,kn);
if (nspins*nbands*nkpts==0) error_exit("impossible null selection");
kpt=malloc(nkpts*sizeof(struct atom));
eval=malloc(nkpts*nspins*nbands*sizeof(double));
occ=malloc(nkpts*nspins*nbands*sizeof(double));
if ((!kpt)||(!eval)||(!occ))
error_exit("malloc error in bands_select");
nk=0;
for(ik=0;ik<kn;ik++){
if (!inrange(ik+1,e->kpt_range)) continue;
if (path){
if (k->path_kpts)
kpt[nk]=k->path_kpts[ik];
}
else
kpt[nk]=k->kpts[ik];
ns=0;
for(is=0;is<e->nspins;is++){
if (!inrange(is,e->spin_range)) continue;
nb=0;
for(ib=0;ib<enb;ib++){
if (!inrange(ib+1,e->band_range)) continue;
if (path){
if (e->path_eval)
eval[nb+nbands*ns+nbands*nspins*nk]=
e->path_eval[ib+enb*is+enb*e->nspins*ik];
if (e->occ)
occ[nb+nbands*ns+nbands*nspins*nk]=
e->path_occ[ib+enb*is+enb*e->nspins*ik];
}
else{
if (e->eval)
eval[nb+nbands*ns+nbands*nspins*nk]=
e->eval[ib+enb*is+enb*e->nspins*ik];
if (e->occ)
occ[nb+nbands*ns+nbands*nspins*nk]=
e->occ[ib+enb*is+enb*e->nspins*ik];
}
nb++;
}
ns++;
}
nk++;
}
if (debug>1) fprintf(stderr,"Selected %d bands from %d, %d spins from %d,"
" %d k-points from %d\n",nbands,e->nbands,
nspins,e->nspins,nkpts,k->n);
if (path){
e->path_nbands=nbands;
if (e->path_occ){
free(e->path_occ);
e->path_occ=occ;
}
if (e->path_eval){
free(e->path_eval);
e->path_eval=eval;
}
if (k->path_kpts){
k->path_nkpt=nk;
free(k->path_kpts);
k->path_kpts=kpt;
}
}
else{
e->nbands=nbands;
e->nspins=nspins;
e->nbspins=nspins;
if (e->occ){
free(e->occ);
e->occ=occ;
}
if (e->eval){
free(e->eval);
e->eval=eval;
}
free(k->kpts);
k->kpts=kpt;
k->n=nkpts;
}
}
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