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PROGS = caf2gap caf2phrap caf_build_consensus caf_depad caf_pad cafcat \
cafmerge fix_quals nd_clip phrapcons sdict templates
EXTRA_DIST = test_caf2gap test_caf2phrap test_caf_build_consensus \
test_caf_depad test_caf_find_misassemblies test_caf_pad \
test_cafcat test_cafmerge test_fix_quals test_nd_clip \
test_nd_edit test_ne_clip test_np_edit test_phrapcons \
test_scf2phd test_sdict test_templates \
test_data/TestTools.pm test_data/caf2phrap.caf \
test_data/caf2phrap.fasta test_data/caf2phrap.qual \
test_data/caf_build_consensus.caf test_data/caf_depad.caf \
test_data/caf_find_misassemblies.caf \
test_data/caf_pad.caf test_data/cafcat.caf \
test_data/cafmerge.caf test_data/nd_clip.caf \
test_data/nd_edit.caf test_data/ne_clip.caf \
test_data/np_edit.caf test_data/phrapcons.caf \
test_data/templates.out test_data/test.caf
RUN = $(patsubst %,%-test,$(PROGS))
ALL_TESTS = $(RUN)
TOOLSRC = $(top_builddir)/src
TESTSDIR = $(top_srcdir)/tests
check: $(RUN)
distclean: clean
rm -f Makefile
clean:
rm -rf $(ALL_TESTS)
$(ALL_TESTS): %-test:
-rm -rf $*-test
mkdir $*-test
if [ ! -e test_data -a x$(builddir) != x$(srcdir) ] ; then ln -s $(TESTSDIR)/test_data test_data ; fi
cd $*-test && ln -s ../test_data/test.caf test.caf
cd $(TOOLSRC) && $(MAKE) $*
$(PERL) $(TESTSDIR)/test_$*
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