1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368
|
<!DOCTYPE HTML PUBLIC "-//IETF//DTD HTML//EN">
<HTML>
<HEAD>
<meta name="GENERATOR" content="HelpBlocks">
<!-- Sitemap 1.0 -->
</HEAD><BODY>
<OBJECT type="text/site properties">
</OBJECT>
<UL>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Welcome">
<param name="Local" value="Welcome.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Installation">
<param name="Local" value="Installation.htm">
</OBJECT>
<UL>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Mac OS X">
<param name="Local" value="InstallationMac.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Microsoft Windows">
<param name="Local" value="InstallationMicrosoft.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Linux/Unix">
<param name="Local" value="InstallationLinux.htm">
</OBJECT>
<UL>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="RedHat/CentOS 6.0">
<param name="Local" value="InstallationRedHat-6.0.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="RedHat/CentOS 5.6">
<param name="Local" value="InstallationRedHat-5.6.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Fedora 16">
<param name="Local" value="InstallationFedora-16.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Fedora 15">
<param name="Local" value="InstallationFedora-15.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Debian 6">
<param name="Local" value="InstallationDebian-6.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Debian 5">
<param name="Local" value="InstallationDebian.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Ubuntu 12">
<param name="Local" value="InstallationUbuntu-12.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Ubuntu 11">
<param name="Local" value="InstallationUbuntu-11.htm">
</OBJECT>
</UL>
</UL>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="User's Guide">
<param name="Local" value="User.htm">
</OBJECT>
<UL>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Quick Start">
<param name="Local" value="UserQuick.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Model List">
<param name="Local" value="UserModel.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Method List">
<param name="Local" value="UserMethod.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Method Editor">
<param name="Local" value="UserMethodEditor.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Recorder">
<param name="Local" value="UserRecorder.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Launcher">
<param name="Local" value="UserLauncher.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Simulation Output">
<param name="Local" value="UserSimulation.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Species Editor">
<param name="Local" value="UserSpecies.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Reaction Editor">
<param name="Local" value="UserReaction.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Compartment Editor">
<param name="Local" value="UserCompartment.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Time Events Editor">
<param name="Local" value="UserTimeEvents.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Trigger Events Editor">
<param name="Local" value="UserTriggerEvents.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Parameter Editor">
<param name="Local" value="UserParameter.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Tool Bar">
<param name="Local" value="UserTool.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Solvers">
<param name="Local" value="UserSolvers.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Mathematical Expressions">
<param name="Local" value="UserMathematical.htm">
</OBJECT>
</UL>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Examples">
<param name="Local" value="Examples.htm">
</OBJECT>
<UL>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Birth-Death">
<param name="Local" value="ExamplesBirthDeath.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Immigration-Death">
<param name="Local" value="ExamplesImmigrationDeath.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Lac Operon">
<param name="Local" value="ExamplesLacOperon.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Chaperones Role in Ageing">
<param name="Local" value="ExamplesChaperones.htm">
</OBJECT>
</UL>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="DSMTS">
<param name="Local" value="Dsmts.htm">
</OBJECT>
<UL>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Birth-Death">
<param name="Local" value="DsmtsBirthDeath.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Immigration-Death">
<param name="Local" value="DsmtsImmigrationDeath.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Dimerization">
<param name="Local" value="DsmtsDimerization.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Batch Immigration-Death">
<param name="Local" value="DsmtsBatch.htm">
</OBJECT>
</UL>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="SAfSB">
<param name="Local" value="SAfSB.htm">
</OBJECT>
<UL>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Chapter 2">
<param name="Local" value="SAfSB2.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Chapter 5">
<param name="Local" value="SAfSB5.htm">
</OBJECT>
</UL>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Simulation Methods">
<param name="Local" value="Simulation.htm">
</OBJECT>
<UL>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Discrete Stochastic Simulations">
<param name="Local" value="SimulationDiscrete.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Direct Method">
<param name="Local" value="SimulationDirect.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="First Reaction Method">
<param name="Local" value="SimulationFirst.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Next Reaction Method">
<param name="Local" value="SimulationNext.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Tau-Leaping">
<param name="Local" value="SimulationTau.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="SAL Tau-Leaping">
<param name="Local" value="SimulationSal.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Direct Method with Time-Dependent Propensities">
<param name="Local" value="SimulationDirectTime.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Hybrid Direct/Tau-Leaping">
<param name="Local" value="SimulationHybrid.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="ODE Integration">
<param name="Local" value="SimulationOde.htm">
</OBJECT>
</UL>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Visualization and Analysis">
<param name="Local" value="Visualization.htm">
</OBJECT>
<UL>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Plotting Time Series Data">
<param name="Local" value="VisualizationPlottingTimeSeries.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Plotting Histograms">
<param name="Local" value="VisualizationPlottingHistograms.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Tables">
<param name="Local" value="VisualizationTables.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Histogram Distance">
<param name="Local" value="VisualizationHistogram.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Significance Testing">
<param name="Local" value="VisualizationSignificance.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Exporting Data">
<param name="Local" value="VisualizationExporting.htm">
</OBJECT>
</UL>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Exporting to R">
<param name="Local" value="ExportR.htm">
</OBJECT>
<UL>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Single Trajectory">
<param name="Local" value="ExportRSingle.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Multiple Trajectories">
<param name="Local" value="ExportRMultiple.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Probability Distributions">
<param name="Local" value="ExportRProbability.htm">
</OBJECT>
</UL>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Performance">
<param name="Local" value="Performance.htm">
</OBJECT>
<UL>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Exact Methods">
<param name="Local" value="PerformanceExact.htm">
</OBJECT>
</UL>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Developer's Guide">
<param name="Local" value="Developer.htm">
</OBJECT>
<UL>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Command Line Solvers">
<param name="Local" value="DeveloperCommand.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="File Formats">
<param name="Local" value="DeveloperFile.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Documentation">
<param name="Local" value="DeveloperDocumentation.htm">
<param name="ID" value=1000>
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Distributions">
<param name="Local" value="DeveloperDistributions.htm">
</OBJECT>
</UL>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Cain XML File Format">
<param name="Local" value="Xml.htm">
</OBJECT>
<UL>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Models">
<param name="Local" value="XmlModels.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Methods">
<param name="Local" value="XmlMethods.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Output">
<param name="Local" value="XmlOutput.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Random Numbers">
<param name="Local" value="XmlRandom.htm">
</OBJECT>
</UL>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="License">
<param name="Local" value="License.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="FAQ">
<param name="Local" value="Faq.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Links">
<param name="Local" value="Links.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Bibliography">
<param name="Local" value="Bibliography.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Acknowledgments">
<param name="Local" value="Acknowledgments.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="Known Issues">
<param name="Local" value="KnownIssues.htm">
</OBJECT>
<LI><OBJECT type="text/sitemap">
<param name="Name" value="To Do">
<param name="Local" value="ToDo.htm">
</OBJECT>
</UL>
</BODY></HTML>
|