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fastqAnalyze
~~~~~~
::
usage: fastqAnalyze [-stats] [-o output.fastq] input.fastq
If no options are given, input.fastq is analyzed and a best guess for the
QV encoding is output. Otherwise, the QV encoding is converted to Sanger-style
using this guess.
In some cases, the encoding cannot be determined. When this occurs, no guess is
output. For conversion, you can force the input QV type with:
-solexa input QV is solexa
-illumina input QV is illumina
-sanger input QV is sanger
-o sanger-style-output.fastq
If -stats is supplied, no QV analysis or conversion is performed, but some simple
statistics are computed and output to stdout.
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