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gatekeeperDumpFASTQ
~~~~~~
::
usage: gatekeeperDumpFASTQ [...] -o fastq-prefix -g gkpStore
-G gkpStore
-o fastq-prefix write files fastq-prefix.(libname).fastq, ...
if fastq-prefix is '-', all sequences output to stdout
if fastq-prefix ends in .gz, .bz2 or .xz, output is compressed
-l libToDump output only read in library number libToDump (NOT IMPLEMENTED)
-r id[-id] output only the single read 'id', or the specified range of ids
-c clearFile clear range file from OBT modules
-allreads if a clear range file, lower case mask the deleted reads
-allbases if a clear range file, lower case mask the non-clear bases
-onlydeleted if a clear range file, only output deleted reads (the entire read)
-fastq output is FASTQ format (with extension .fastq, default)
-fasta output is FASTA format (with extension .fasta)
-nolibname don't include the library name in the output file name
ERROR: no gkpStore (-G) supplied.
ERROR: no output prefix (-o) supplied.
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