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ovStoreBuild
~~~~~~
::
usage: ovStoreBuild -O asm.ovlStore -G asm.gkpStore [opts] [-L fileList | *.ovb.gz]
-O asm.ovlStore path to store to create
-G asm.gkpStore path to gkpStore for this assembly
-L fileList read input filenames from 'flieList'
-F f use up to 'f' files for store creation
-M g use up to 'g' gigabytes memory for sorting overlaps
default 4; g-0.125 gb is available for sorting overlaps
-e e filter overlaps above e fraction error
-l l filter overlaps below l bases overlap length (needs gkpStore to get read lengths!)
Non-building options:
-evalues input files are evalue updates from overlap error adjustment
-config out.dat don't build a store, just dump a binary partitioning file for ovStoreBucketizer
ERROR: No overlap store (-o) supplied.
ERROR: No gatekeeper store (-g) supplied.
ERROR: No input overlap files (-L or last on the command line) supplied.
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