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overlapPair
~~~~~~
::
usage: overlapPair ...
-G gkpStore Mandatory, path to gkpStore
Inputs can come from either a store or a file.
-O ovlStore
-O ovlFile
If from an ovlStore, the range of reads processed can be restricted.
-b bgnID
-e endID
Outputs will be written to a store or file, depending on the input type
-o ovlStore
-o ovlFile
-erate e Overlaps are computed at 'e' fraction error; must be larger than the original erate
-partial Overlaps are 'overlapInCore -G' partial overlaps
-memory m Use up to 'm' GB of memory
-t n Use up to 'n' cores
Advanced options:
-invert Invert the overlap A <-> B before aligning (they are not re-inverted before output)
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