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Source: canu
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Section: science
Priority: optional
Build-Depends: debhelper-compat (= 12),
libboost-dev,
libmeryl-dev,
# For File::Path
libfilesys-df-perl,
mhap (>= 2.1.3)
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/canu
Vcs-Git: https://salsa.debian.org/med-team/canu.git
Homepage: http://canu.readthedocs.org/en/latest/
Package: canu
Architecture: any
Depends: ${shlibs:Depends},
${misc:Depends},
${perl:Depends},
libfilesys-df-perl,
mhap (>= 2.1.3),
gnuplot
Suggests: pbgenomicconsensus,
nanopolish
Description: single molecule sequence assembler for genomes
Canu is a fork of the Celera Assembler, designed for high-noise
single-molecule sequencing (such as the PacBio RS II or Oxford
Nanopore MinION).
.
Canu is a hierarchical assembly pipeline which runs in four steps:
.
* Detect overlaps in high-noise sequences using MHAP
* Generate corrected sequence consensus
* Trim corrected sequences
* Assemble trimmed corrected sequences
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