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#!/usr/bin/make -f
#DH_VERBOSE = 1
include /usr/share/dpkg/default.mk
#export CPPFLAGS += -I/usr/include/kmer
export DEB_BUILD_MAINT_OPTIONS=hardening=+all
export CFLAGS := $(CPPFLAGS) $(CFLAGS)
export CXXFLAGS := $(CPPFLAGS) $(CXXFLAGS)
ifeq (ppc64el,$(DEB_HOST_ARCH))
export CFLAGS += -DHAVE_ALTIVEC=1
export CXXFLAGS += -DHAVE_ALTIVEC=1
endif
ifeq (arm64,$(DEB_HOST_ARCH))
export CFLAGS += -DHAVE_NEON=1
export CXXFLAGS += -DHAVE_NEON=1
endif
%:
dh $@ --sourcedirectory=src/
override_dh_auto_build:
rm -Rf src/utility/src/utility/libbacktrace src/stores/libsnappy
dh_auto_build
find build \
-name OverlapMhap.pm \
-exec sed -i 's#\(\s*my \$$javaPath = \).*#\1 "/usr/lib/jvm/java-8-openjdk-$(DEB_HOST_ARCH)/bin/java";#' {} +
override_dh_install:
dh_install
for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' $${pl} ; \
done
rm -Rf debian/canu/build
override_dh_auto_clean:
rm -rf Linux-*
rm -f src/canu_version.H
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