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#ifndef __BRAIN_MODEL_SURFACE_PAINT_SULCAL_IDENTIFICATION_H__
#define __BRAIN_MODEL_SURFACE_PAINT_SULCAL_IDENTIFICATION_H__
/*LICENSE_START*/
/*
* Copyright 1995-2002 Washington University School of Medicine
*
* http://brainmap.wustl.edu
*
* This file is part of CARET.
*
* CARET is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* CARET is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CARET; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*
*/
/*LICENSE_END*/
#include "BrainModelAlgorithm.h"
class AreaColorFile;
class BrainModelSurface;
class MetricFile;
class PaintFile;
class SurfaceShapeFile;
class VocabularyFile;
class VolumeFile;
/// generate paint sulcal identication
class BrainModelSurfacePaintSulcalIdentification : public BrainModelAlgorithm {
public:
// constructor
BrainModelSurfacePaintSulcalIdentification(BrainSet* bs,
const BrainModelSurface* fiducialSurfaceIn,
const BrainModelSurface* inflatedSurfaceIn,
const BrainModelSurface* veryInflatedSurfaceIn,
PaintFile* paintFileInOut,
const int paintFileGeographyColumnNumberIn,
AreaColorFile* areaColorFileInOut,
const SurfaceShapeFile* depthSurfaceShapeFileIn,
const int depthSurfaceShapeFileColumnNumberIn,
VocabularyFile* vocabularyFileOut);
// destructor
~BrainModelSurfacePaintSulcalIdentification();
// execute the algorithm
void execute() throw (BrainModelAlgorithmException);
/// get probabilistic metric file of sulci locations
const MetricFile* getMetricFile() const { return metricFile; }
/// get paint file containing the sulcal identification
const PaintFile* getPaintFile() const { return paintFile; }
/// get area color file containing paint sulcal identification
const AreaColorFile* getAreaColorFile() const { return areaColorFile; }
// get the name of the Sulcus ID paint column
static QString getSulcusIdPaintColumnName();
protected:
/// fiducila surface
const BrainModelSurface* fiducialSurface;
/// inflated surface
const BrainModelSurface* inflatedSurface;
/// very inflated surface
const BrainModelSurface* veryInflatedSurface;
/// input paint file containing geography paint column
PaintFile* paintFile;
/// column number of geography in paint file
const int paintFileGeographyColumnNumber;
/// area color file
AreaColorFile* areaColorFile;
/// surface shape file containing depth information
const SurfaceShapeFile* depthSurfaceShapeFile;
/// surface shape file depth column number
const int depthSurfaceShapeFileColumnNumber;
/// vocabulary file
VocabularyFile* vocabularyFile;
/// probabilistic metric file
MetricFile* metricFile;
/// left hemisphere flag
bool leftHemisphereFlag;
};
#endif // __BRAIN_MODEL_SURFACE_PAINT_SULCAL_IDENTIFICATION_H__
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