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#ifndef __COMMAND_FILE_CONVERT_H__
#define __COMMAND_FILE_CONVERT_H__
/*LICENSE_START*/
/*
* Copyright 1995-2002 Washington University School of Medicine
*
* http://brainmap.wustl.edu
*
* This file is part of CARET.
*
* CARET is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* CARET is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CARET; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*
*/
/*LICENSE_END*/
#include "AbstractFile.h"
#include "CommandBase.h"
class AreaColorFile;
class BrainSet;
class ProgramParameters;
/// class for data file conversion
class CommandFileConvert : public CommandBase {
public:
// constructor
CommandFileConvert();
// destructor
~CommandFileConvert();
// get full help information
QString getHelpInformation() const;
// get the script builder parameters
virtual void getScriptBuilderParameters(ScriptBuilderParameters& paramsOut) const;
protected:
enum MODE {
MODE_NONE,
MODE_CONTOUR_CONVERT,
MODE_FORMAT_CONVERT,
MODE_FORMAT_INFO,
MODE_SPEC_CONVERT,
MODE_SURFACE_CONVERT,
MODE_FREE_SURFER_CURVATURE_TO_CARET,
MODE_FREE_SURFER_FUNCTIONAL_TO_CARET,
MODE_FREE_SURFER_LABEL_TO_CARET,
MODE_CARET_PAINT_TO_FREE_SURFER_LABEL,
MODE_CARET_SHAPE_TO_FREE_SURFER_CURVATURE,
MODE_VOLUME
};
enum SURFACE_FILE_TYPE {
SURFACE_TYPE_UNKNOWN,
SURFACE_TYPE_BYU,
SURFACE_TYPE_CARET,
SURFACE_TYPE_FREE_SURFER,
SURFACE_TYPE_FREE_SURFER_PATCH,
SURFACE_TYPE_GIFTI,
SURFACE_TYPE_MNI_OBJ,
SURFACE_TYPE_OPEN_INVENTOR,
SURFACE_TYPE_STL,
SURFACE_TYPE_VTK,
SURFACE_TYPE_XML_VTK
};
// execute the command
void executeCommand() throw (BrainModelAlgorithmException,
CommandException,
FileException,
ProgramParametersException,
StatisticException);
// Convert caret files or display info
// info about the file.
void fileFormatConvert(const std::vector<QString>& dataFileNames,
const QString& dataFileFormatList,
const AreaColorFile& areaColorFile) throw (CommandException);
// Write/Update a spec file.
void updateSpecFile(const std::vector<QString>& tags,
const std::vector<QString>& values) throw (CommandException);
// Convert a free surfer curvature file to caret surface shape.
void freeSurferCurvatureToCaretConvert() throw (CommandException);
// Convert a caret paint file to free surfer label file
void caretPaintToFreeSurferLabel() throw (CommandException);
// Convert a caret shape column to free surfer curvature file
void caretShapeToFreeSurferCurvature() throw (CommandException);
// Convert a free surfer functional file to caret metric.
void freeSurferLabelToCaretConvert() throw (CommandException);
// Convert a free surfer functional file to caret metric.
void freeSurferFunctionalToCaretConvert() throw (CommandException);
// Convert a surface file to another type.
void surfaceFileConversion() throw (CommandException);
// Convert a surface type name to an enum.
SURFACE_FILE_TYPE getSurfaceFileType(const QString& surfaceTypeName,
const QString& inputOutputName)
throw (CommandException);
// convert a volulme
void volumeConversion(const QString& inputVolumeName,
const QString& outputVolumeName) throw (CommandException);
// Convert a spec file's data files
void specFileConvert(const QString& dataFileFormatList,
const QString& specFileName) throw (CommandException);
// Convert a contour file
void contourConversion(const QString& contourType,
const QString& contourFileName,
const QString& caretContourFileName,
const QString& caretContourCellFileName) throw (CommandException);
SURFACE_FILE_TYPE inputSurfaceType;
SURFACE_FILE_TYPE outputSurfaceType;
MODE mode;
AbstractFile::FILE_FORMAT fileWriteType;
QString specFileName;
QString structureName;
QString inputSurfaceName;
QString inputSurfaceName2;
QString outputSurfaceName;
QString outputSurfaceName2;
QString outputCoordTypeName;
QString outputTopoTypeName;
QString inputShapeName;
QString inputShapeColumn;
QString outputCurvatureName;
BrainSet* brainSet;
};
#endif // __COMMAND_FILE_CONVERT_H__
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