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/*LICENSE_START*/
/*
* Copyright 1995-2002 Washington University School of Medicine
*
* http://brainmap.wustl.edu
*
* This file is part of CARET.
*
* CARET is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* CARET is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CARET; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*
*/
/*LICENSE_END*/
#include <iostream>
#include <QFileInfo>
#include <QTime>
#include "BrainSet.h"
#include "CommandFileReadTime.h"
#include "CoordinateFile.h"
#include "BorderProjectionFile.h"
#include "FileFilters.h"
#include "FileUtilities.h"
#include "FociProjectionFile.h"
#include "FreeSurferSurfaceFile.h"
#include "GiftiDataArrayFile.h"
#include "MetricFile.h"
#include "PreferencesFile.h"
#include "ProgramParameters.h"
#include "ScriptBuilderParameters.h"
#include "SpecFile.h"
#include "SurfaceShapeFile.h"
#include "TopologyFile.h"
#include "VtkModelFile.h"
/**
* constructor.
*/
CommandFileReadTime::CommandFileReadTime()
: CommandBase("-file-read-time",
"FILE READ TIME")
{
iterations = 3;
numberOfThreads = 1;
}
/**
* destructor.
*/
CommandFileReadTime::~CommandFileReadTime()
{
}
/**
* get the script builder parameters.
*/
void
CommandFileReadTime::getScriptBuilderParameters(ScriptBuilderParameters& paramsOut) const
{
paramsOut.clear();
QStringList filters;
filters << FileFilters::getCoordinateGenericFileFilter();
filters << FileFilters::getBorderProjectionFileFilter();
filters << FileFilters::getFociProjectionFileFilter();
filters << FileFilters::getMetricFileFilter();
filters << FileFilters::getSpecFileFilter();
filters << FileFilters::getSurfaceShapeFileFilter();
filters << FileFilters::getTopologyGenericFileFilter();
paramsOut.addFile("File Name", filters);
paramsOut.addVariableListOfParameters("File Timing");
}
/**
* get full help information.
*/
QString
CommandFileReadTime::getHelpInformation() const
{
QString helpInfo =
(indent3 + getShortDescription() + "\n"
+ indent6 + parameters->getProgramNameWithoutPath() + " " + getOperationSwitch() + " \n"
+ indent9 + "<filename>\n"
+ indent9 + "[-iter iterations]\n"
+ indent9 + "[-threads number-of-threads] \n"
+ indent9 + "\n"
+ indent9 + "Time the reading of a caret data file. Not all caret files\n"
+ indent9 + "are supported for this command.\n"
+ indent9 + "\n"
+ indent9 + "The file is read \"iteration\" times and the average of \n"
+ indent9 + "those times is printed. The default number of iterations\n"
+ indent9 + "is " + QString::number(iterations) + ". \n"
+ indent9 + "\n"
+ indent9 + "File types supported at this time are\n"
+ indent9 + " Coordinate \n"
+ indent9 + " Border Projection \n"
+ indent9 + " Foci Projection \n"
+ indent9 + " Metric \n"
+ indent9 + " Spec File \n"
+ indent9 + " Surface Shape File \n"
+ indent9 + " Topology File \n"
+ indent9 + "\n"
+ indent9 + "The time for a Spec File is the time to read all of the\n"
+ indent9 + "spec file's data files.\n"
+ indent9 + "\n"
+ indent9 + "The number of threads parameter applied only to the \n"
+ indent9 + "reading of Spec Files. The default number of threads \n"
+ indent9 + "is " + QString::number(numberOfThreads) + ". \n"
+ indent9 + "\n");
return helpInfo;
}
/**
* read the file for timing purposes.
*/
void
CommandFileReadTime::readFileForTiming(AbstractFile* dataFile,
const QString& fileName,
float& timeToReadOut,
float& fileSizeInMBOut)
{
float timeTotal = 0.0;
for (int i = 0; i < iterations; i++) {
dataFile->readFile(fileName);
timeTotal += dataFile->getTimeToReadFileInSeconds();
}
timeToReadOut = timeTotal / static_cast<float>(iterations);
const float oneMegabyte = 1048576.0;
QFileInfo fi(dataFile->getFileName());
fileSizeInMBOut = fi.size() / oneMegabyte;
}
/**
* execute the command.
*/
void
CommandFileReadTime::executeCommand() throw (BrainModelAlgorithmException,
CommandException,
FileException,
ProgramParametersException,
StatisticException)
{
//
// Get the parameters
//
const QString fileName = parameters->getNextParameterAsString("File Name");
while (parameters->getParametersAvailable()) {
const QString paramName = parameters->getNextParameterAsString("Param Name");
if (paramName == "-iter") {
iterations = parameters->getNextParameterAsInt("Iterations");
}
else if (paramName == "-threads") {
numberOfThreads = parameters->getNextParameterAsInt("Number of Threads");
}
else {
throw CommandException("Unrecognized parameter: " + paramName);
}
}
const QString fileNameNoPath = FileUtilities::basename(fileName);
//
// Create a file based upon the file name extension
//
float timeInSeconds = 0.0;
float fileSizeInMB = 0.0;
if (fileName.endsWith(SpecFile::getCoordinateFileExtension())) {
CoordinateFile cf;
readFileForTiming(&cf, fileName, timeInSeconds, fileSizeInMB);
}
else if (fileName.endsWith(SpecFile::getBorderProjectionFileExtension())) {
BorderProjectionFile bpf;
readFileForTiming(&bpf, fileName, timeInSeconds, fileSizeInMB);
}
else if (fileName.endsWith(SpecFile::getFociProjectionFileExtension())) {
FociProjectionFile fpf;
readFileForTiming(&fpf, fileName, timeInSeconds, fileSizeInMB);
}
else if (fileName.endsWith(SpecFile::getFreeSurferAsciiSurfaceFileExtension())) {
FreeSurferSurfaceFile fs;
readFileForTiming(&fs, fileName, timeInSeconds, fileSizeInMB);
}
else if (fileName.endsWith(SpecFile::getGiftiGenericFileExtension())) {
GiftiDataArrayFile gifti;
readFileForTiming(&gifti, fileName, timeInSeconds, fileSizeInMB);
}
else if (fileName.endsWith(SpecFile::getMetricFileExtension())) {
MetricFile mf;
readFileForTiming(&mf, fileName, timeInSeconds, fileSizeInMB);
}
else if (fileName.endsWith(SpecFile::getSpecFileExtension())) {
for (int i = 0; i < iterations; i++) {
SpecFile sf;
sf.readFile(fileName);
sf.setAllFileSelections(SpecFile::SPEC_TRUE);
BrainSet bs;
PreferencesFile* pf = bs.getPreferencesFile();
pf->setNumberOfFileReadingThreads(numberOfThreads);
QString errorMessage;
QTime timer;
timer.start();
bs.readSpecFile(sf,
fileName,
errorMessage);
if (errorMessage.isEmpty() == false) {
throw CommandException("Spec File Read error, timing test invalid\n"
+ errorMessage);
}
timeInSeconds += (static_cast<float>(timer.elapsed()) / 1000.0);
}
timeInSeconds /= static_cast<float>(iterations);
}
else if (fileName.endsWith(SpecFile::getSurfaceShapeFileExtension())) {
SurfaceShapeFile ssf;
readFileForTiming(&ssf, fileName, timeInSeconds, fileSizeInMB);
}
else if (fileName.endsWith(SpecFile::getTopoFileExtension())) {
TopologyFile tf;
readFileForTiming(&tf, fileName, timeInSeconds, fileSizeInMB);
}
else if (fileName.endsWith(SpecFile::getVtkModelFileExtension())) {
VtkModelFile vmf;
readFileForTiming(&vmf, fileName, timeInSeconds, fileSizeInMB);
}
else {
throw CommandException("Unsupported file type for timing.");
}
std::cout << "------ "
<< fileNameNoPath.toAscii().constData()
<< " ------"
<< std::endl;
std::cout << " Average time to read: "
<< timeInSeconds
<< " seconds." << std::endl;
if (fileSizeInMB > 0) {
std::cout << " File Size (MB): "
<< fileSizeInMB
<< std::endl;
}
}
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