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/*LICENSE_START*/
/*
* Copyright 1995-2002 Washington University School of Medicine
*
* http://brainmap.wustl.edu
*
* This file is part of CARET.
*
* CARET is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* CARET is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CARET; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*
*/
/*LICENSE_END*/
#include "CommandMetricMultipleCorrelationCoefficientMap.h"
#include "FileFilters.h"
#include "MetricFile.h"
#include "ProgramParameters.h"
#include "ScriptBuilderParameters.h"
/**
* constructor.
*/
CommandMetricMultipleCorrelationCoefficientMap::CommandMetricMultipleCorrelationCoefficientMap()
: CommandBase("-metric-multiple-correlation-coefficient-map",
"METRIC MULTIPLE CORRELATION COEFFICIENT MAP")
{
}
/**
* destructor.
*/
CommandMetricMultipleCorrelationCoefficientMap::~CommandMetricMultipleCorrelationCoefficientMap()
{
}
/**
* get the script builder parameters.
*/
void
CommandMetricMultipleCorrelationCoefficientMap::getScriptBuilderParameters(ScriptBuilderParameters& paramsOut) const
{
paramsOut.clear();
paramsOut.addFile("Output Metric File Name", FileFilters::getMetricShapeFileFilter());
paramsOut.addFile("Dependent Metric File Name", FileFilters::getMetricShapeFileFilter());
paramsOut.addMultipleFiles("Independent Metric File Names", FileFilters::getMetricShapeFileFilter());
}
/**
* get full help information.
*/
QString
CommandMetricMultipleCorrelationCoefficientMap::getHelpInformation() const
{
QString helpInfo =
(indent3 + getShortDescription() + "\n"
+ indent6 + parameters->getProgramNameWithoutPath() + " " + getOperationSwitch() + " \n"
+ indent9 + "<output-metric-file-name>\n"
+ indent9 + "<dependent-metric-file-name>\n"
+ indent9 + "<independent-metric-file-names>\n"
+ indent9 + "\n"
+ indent9 + "For each node, compute a correlation coefficient from the node's values\n"
+ indent9 + "in the input metric files. The two input files must have the same\n"
+ indent9 + "number of columns and column 'j' in all files should contain data\n"
+ indent9 + "for the same subject.\n"
+ indent9 + "\n");
return helpInfo;
}
/**
* execute the command.
*/
void
CommandMetricMultipleCorrelationCoefficientMap::executeCommand() throw (BrainModelAlgorithmException,
CommandException,
FileException,
ProgramParametersException,
StatisticException)
{
const QString outputMetricFileName =
parameters->getNextParameterAsString("Output Metric File Name");
const QString dependentMetricFileName =
parameters->getNextParameterAsString("Dependent Metric File Name");
std::vector<QString> independentMetricFileNames;
while (parameters->getParametersAvailable()) {
independentMetricFileNames.push_back(
parameters->getNextParameterAsString("Independent Metric File Name"));
}
MetricFile dependentMetricFile;
dependentMetricFile.readFile(dependentMetricFileName);
std::vector<MetricFile*> independentMetricFiles;
for (unsigned int i = 0; i < independentMetricFileNames.size(); i++) {
MetricFile* mf = new MetricFile;
mf->readFile(independentMetricFileNames[i]);
independentMetricFiles.push_back(mf);
}
MetricFile* outputMetricFile = MetricFile::computeMultipleCorrelationCoefficientMap(&dependentMetricFile,
independentMetricFiles);
outputMetricFile->writeFile(outputMetricFileName);
delete outputMetricFile;
outputMetricFile = NULL;
for (unsigned int i = 0; i < independentMetricFileNames.size(); i++) {
delete independentMetricFiles[i];
independentMetricFiles[i] = NULL;
}
}
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