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/*LICENSE_START*/
/*
* Copyright 1995-2002 Washington University School of Medicine
*
* http://brainmap.wustl.edu
*
* This file is part of CARET.
*
* CARET is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* CARET is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CARET; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*
*/
/*LICENSE_END*/
#include <iostream>
#include "CommandStudyMetaDataFileValidate.h"
#include "FileFilters.h"
#include "ProgramParameters.h"
#include "ScriptBuilderParameters.h"
#include "StudyMetaDataFile.h"
#include "TextFile.h"
/**
* constructor.
*/
CommandStudyMetaDataFileValidate::CommandStudyMetaDataFileValidate()
: CommandBase("-study-metadata-file-validate",
"STUDY METADATA FILE VALIDATION")
{
}
/**
* destructor.
*/
CommandStudyMetaDataFileValidate::~CommandStudyMetaDataFileValidate()
{
}
/**
* get the script builder parameters.
*/
void
CommandStudyMetaDataFileValidate::getScriptBuilderParameters(ScriptBuilderParameters& paramsOut) const
{
paramsOut.clear();
paramsOut.addFile("Study Metadata File", FileFilters::getStudyMetaDataFileFilter());
paramsOut.addVariableListOfParameters("Output Text File Name");
}
/**
* get full help information.
*/
QString
CommandStudyMetaDataFileValidate::getHelpInformation() const
{
QString helpInfo =
(indent3 + getShortDescription() + "\n"
+ indent6 + parameters->getProgramNameWithoutPath() + " " + getOperationSwitch() + " \n"
+ indent9 + "<input-study-metatdata-file>\n"
+ indent9 + "[-output output-text-file]\n"
+ indent9 + "\n"
+ indent9 + "Validate a study metadata file by searching for missing \n"
+ indent9 + "or duplicate PubMed ID's or Study Names, missing figure \n"
+ indent9 + "numbers, figure panel numbers, page reference numbers, \n"
+ indent9 + "page reference subheader numbers or short names, table\n"
+ indent9 + "numbers, and table subheader numbers or short names.\n"
+ indent9 + "\n"
+ indent9 + "If there are any errors, they are written to the output\n"
+ indent9 + "text file if it is provided. Otherwise, results are \n"
+ indent9 + "written to the terminal.\n"
+ indent9 + "\n");
return helpInfo;
}
/**
* execute the command.
*/
void
CommandStudyMetaDataFileValidate::executeCommand() throw (BrainModelAlgorithmException,
CommandException,
FileException,
ProgramParametersException,
StatisticException)
{
const QString studyFileName =
parameters->getNextParameterAsString("Input Study Metadata File");
QString textFileName;
while (parameters->getParametersAvailable()) {
QString paramName = parameters->getNextParameterAsString("Opt Param");
if (paramName == "-output") {
textFileName = parameters->getNextParameterAsString("Text File Name");
}
else {
throw CommandException("Unexpected Parameter: " + paramName);
}
}
StudyMetaDataFile smdf;
smdf.readFile(studyFileName);
QStringList sl = smdf.validStudyMetaDataFile();
if (sl.count() <= 0) {
std::cout << "No study problems were found." << std::endl;
}
else {
const QString msg(sl.join("\n"));
if (textFileName.isEmpty() == false) {
TextFile tf;
tf.setText(msg);
tf.writeFile(textFileName);
}
else {
std::cout << msg.toAscii().constData() << std::endl;
}
}
}
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