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/*LICENSE_START*/
/*
* Copyright 1995-2002 Washington University School of Medicine
*
* http://brainmap.wustl.edu
*
* This file is part of CARET.
*
* CARET is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* CARET is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CARET; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*
*/
/*LICENSE_END*/
#include <algorithm>
#include <iostream>
#include <map>
#include "BorderFile.h"
#include "CommandSurfaceBorderLengths.h"
#include "FileFilters.h"
#include "ProgramParameters.h"
#include "ScriptBuilderParameters.h"
#include "StatisticDataGroup.h"
#include "StatisticDescriptiveStatistics.h"
/**
* constructor.
*/
CommandSurfaceBorderLengths::CommandSurfaceBorderLengths()
: CommandBase("-surface-border-lengths",
"SURFACE BORDER LENGTHS")
{
}
/**
* destructor.
*/
CommandSurfaceBorderLengths::~CommandSurfaceBorderLengths()
{
}
/**
* get the script builder parameters.
*/
void
CommandSurfaceBorderLengths::getScriptBuilderParameters(ScriptBuilderParameters& paramsOut) const
{
paramsOut.clear();
paramsOut.addMultipleFiles("Input Border Files", FileFilters::getBorderGenericFileFilter());
}
/**
* get full help information.
*/
QString
CommandSurfaceBorderLengths::getHelpInformation() const
{
QString helpInfo =
(indent3 + getShortDescription() + "\n"
+ indent6 + parameters->getProgramNameWithoutPath() + " " + getOperationSwitch() + " \n"
+ indent9 + "<input-border-file-1>\n"
+ indent9 + "[additional-input-border-files]\n"
+ indent9 + "\n"
+ indent9 + "Get information about border lengths.\n"
+ indent9 + "\n");
return helpInfo;
}
/**
* execute the command.
*/
void
CommandSurfaceBorderLengths::executeCommand() throw (BrainModelAlgorithmException,
CommandException,
FileException,
ProgramParametersException,
StatisticException)
{
//
// Get parameters
//
std::vector<QString> inputBorderFileNames;
inputBorderFileNames.push_back(
parameters->getNextParameterAsString("Input Border File Name 1"));
while (parameters->getParametersAvailable()) {
inputBorderFileNames.push_back(
parameters->getNextParameterAsString("Input Border File Name"));
}
//
// Border lengths
//
std::vector<BorderLengths> borderLengths;
//
// Read the input border files
//
const int numBorderFiles = static_cast<int>(inputBorderFileNames.size());
for (int i = 0; i < numBorderFiles; i++) {
BorderFile bf;
bf.readFile(inputBorderFileNames[i]);
std::cout << inputBorderFileNames[i].toAscii().constData()
<< "------------------"
<< std::endl;
const int numBorders = bf.getNumberOfBorders();
for (int j = 0; j < numBorders; j++) {
Border* b = bf.getBorder(j);
const QString name = b->getName();
const float length = b->getBorderLength();
std::cout << " " << name.toAscii().constData()
<< ": " << length << std::endl;
BorderLengths* bl = NULL;
for (unsigned int i = 0; i < borderLengths.size(); i++) {
if (borderLengths[i].name == name) {
bl = &borderLengths[i];
}
}
if (bl == NULL) {
BorderLengths blNew;
blNew.name = name;
borderLengths.push_back(blNew);
bl = &borderLengths[borderLengths.size() - 1];
}
bl->lengths.push_back(length);
}
}
std::cout << "------------------------------------------------" << std::endl;
for (std::vector<BorderLengths>::iterator iter = borderLengths.begin();
iter != borderLengths.end();
iter++) {
QString name = iter->name;
std::vector<float> lengths = iter->lengths;
StatisticDataGroup sda(&lengths,
StatisticDataGroup::DATA_STORAGE_MODE_POINT);
StatisticDescriptiveStatistics stats;
stats.addDataGroup(&sda, false);
stats.execute();
float minValue, maxValue;
stats.getMinimumAndMaximum(minValue, maxValue);
std::cout << name.toAscii().constData()
<< " avg=" << stats.getMean()
<< " dev=" << stats.getStandardDeviation()
<< " min=" << minValue
<< " max=" << maxValue
<< std::endl;
}
}
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