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/*LICENSE_START*/
/*
* Copyright 1995-2002 Washington University School of Medicine
*
* http://brainmap.wustl.edu
*
* This file is part of CARET.
*
* CARET is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* CARET is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CARET; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*
*/
/*LICENSE_END*/
#include <algorithm>
#include "BorderFile.h"
#include "BrainSet.h"
#include "CommandSurfaceBorderSetVariability.h"
#include "FileFilters.h"
#include "ProgramParameters.h"
#include "ScriptBuilderParameters.h"
/**
* constructor.
*/
CommandSurfaceBorderSetVariability::CommandSurfaceBorderSetVariability()
: CommandBase("-surface-border-set-variability",
"SURFACE BORDER SET VARIABILITY")
{
}
/**
* destructor.
*/
CommandSurfaceBorderSetVariability::~CommandSurfaceBorderSetVariability()
{
}
/**
* get the script builder parameters.
*/
void
CommandSurfaceBorderSetVariability::getScriptBuilderParameters(ScriptBuilderParameters& paramsOut) const
{
paramsOut.addFile("Input Border File",
FileFilters::getBorderGenericFileFilter());
paramsOut.addFile("Output Border File",
FileFilters::getBorderGenericFileFilter());
paramsOut.addFloat("New Variability", 1.0, 0.0, 100000.0);
}
/**
* get full help information.
*/
QString
CommandSurfaceBorderSetVariability::getHelpInformation() const
{
QString helpInfo =
(indent3 + getShortDescription() + "\n"
+ indent6 + parameters->getProgramNameWithoutPath() + " " + getOperationSwitch() + " \n"
+ indent9 + "<input-border-file-name>\n"
+ indent9 + "<output-border-file-name>\n"
+ indent9 + "<variability-value>\n"
+ indent9 + "\n"
+ indent9 + "Set the variability for all borders in a file..\n"
+ indent9 + "\n");
return helpInfo;
}
/**
* execute the command.
*/
void
CommandSurfaceBorderSetVariability::executeCommand() throw (BrainModelAlgorithmException,
CommandException,
FileException,
ProgramParametersException,
StatisticException)
{
const QString inputBorderFileName =
parameters->getNextParameterAsString("Input Border File Name");
const QString outputBorderFileName =
parameters->getNextParameterAsString("Output Border File Name");
const float variability =
parameters->getNextParameterAsFloat("Variability");
checkForExcessiveParameters();
//
// Read input file
//
BorderFile borderFile;
borderFile.readFile(inputBorderFileName);
//
// Loop through the borders
//
const int num = borderFile.getNumberOfBorders();
for (int i = 0; i < num; i++) {
//
// Get the border projection
//
Border* bp = borderFile.getBorder(i);
bp->setArealUncertainty(variability);
}
//
// Write output border file
//
borderFile.writeFile(outputBorderFileName);
}
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