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/*LICENSE_START*/
/*
* Copyright 1995-2002 Washington University School of Medicine
*
* http://brainmap.wustl.edu
*
* This file is part of CARET.
*
* CARET is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* CARET is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CARET; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*
*/
/*LICENSE_END*/
#include <iostream>
#include <QFile>
#include "FociProjectionFile.h"
#include "CommandSurfaceFociDelete.h"
#include "FileFilters.h"
#include "ProgramParameters.h"
#include "ScriptBuilderParameters.h"
/**
* constructor.
*/
CommandSurfaceFociDelete::CommandSurfaceFociDelete()
: CommandBase("-surface-foci-delete",
"SURFACE FOCI DELETION")
{
}
/**
* destructor.
*/
CommandSurfaceFociDelete::~CommandSurfaceFociDelete()
{
}
/**
* get the script builder parameters.
*/
void
CommandSurfaceFociDelete::getScriptBuilderParameters(ScriptBuilderParameters& paramsOut) const
{
paramsOut.clear();
paramsOut.addFile("Input Foci Projection File", FileFilters::getFociProjectionFileFilter());
paramsOut.addFile("Output Foci Projection File", FileFilters::getFociProjectionFileFilter());
paramsOut.addVariableListOfParameters("Foci Names");
}
/**
* get full help information.
*/
QString
CommandSurfaceFociDelete::getHelpInformation() const
{
QString helpInfo =
(indent3 + getShortDescription() + "\n"
+ indent6 + parameters->getProgramNameWithoutPath() + " " + getOperationSwitch() + " \n"
+ indent9 + "<input-foci-projection-file-name> \n"
+ indent9 + "<output-foci-projection-file-name> \n"
+ indent9 + "[foci-names] \n"
+ indent9 + "\n"
+ indent9 + "Delete foci with the specified names from the foci\n"
+ indent9 + "projection file. If a foci name contains spaces, it must\n"
+ indent9 + "be enclosed within double quotes.\n"
+ indent9 + "\n"
+ indent9 + "If the input foci projection file name does not exist\n"
+ indent9 + "the command will exit without reporting an error but\n"
+ indent9 + "it will report a warning.\n"
+ indent9 + "\n");
return helpInfo;
}
/**
* execute the command.
*/
void
CommandSurfaceFociDelete::executeCommand() throw (BrainModelAlgorithmException,
CommandException,
FileException,
ProgramParametersException,
StatisticException)
{
const QString inputFociProjectionFileName =
parameters->getNextParameterAsString("Input Foci Projection File Name");
const QString outputFociProjectionFileName =
parameters->getNextParameterAsString("Output Foci Projection File Name");
if (QFile::exists(inputFociProjectionFileName) == false) {
std::cout << "WARNING "
<< getShortDescription().toAscii().constData()
<< " \""
<< inputFociProjectionFileName.toAscii().constData()
<< "\" was not found."
<< std::endl;
return;
}
FociProjectionFile fociProjectionFile;
fociProjectionFile.readFile(inputFociProjectionFileName);
while (parameters->getParametersAvailable()) {
const QString focusName = parameters->getNextParameterAsString("Focus Name");
fociProjectionFile.deleteCellProjectionsWithName(focusName);
}
fociProjectionFile.writeFile(outputFociProjectionFileName);
}
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