1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
|
/*LICENSE_START*/
/*
* Copyright 1995-2002 Washington University School of Medicine
*
* http://brainmap.wustl.edu
*
* This file is part of CARET.
*
* CARET is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* CARET is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CARET; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*
*/
/*LICENSE_END*/
#include "CommandSurfaceTopologyDisconnectNodes.h"
#include "FileFilters.h"
#include "NodeRegionOfInterestFile.h"
#include "ProgramParameters.h"
#include "ScriptBuilderParameters.h"
#include "TopologyFile.h"
/**
* constructor.
*/
CommandSurfaceTopologyDisconnectNodes::CommandSurfaceTopologyDisconnectNodes()
: CommandBase("-surface-topology-disconnect-nodes",
"SURFACE TOPOLOGY DISCONNECT NODES")
{
}
/**
* destructor.
*/
CommandSurfaceTopologyDisconnectNodes::~CommandSurfaceTopologyDisconnectNodes()
{
}
/**
* get the script builder parameters.
*/
void
CommandSurfaceTopologyDisconnectNodes::getScriptBuilderParameters(ScriptBuilderParameters& paramsOut) const
{
paramsOut.clear();
paramsOut.addFile("Input Topology File Name", FileFilters::getTopologyGenericFileFilter());
paramsOut.addFile("Output Topology File Name", FileFilters::getTopologyGenericFileFilter());
paramsOut.addFile("Region of Interest File Name", FileFilters::getRegionOfInterestFileFilter());
}
/**
* get full help information.
*/
QString
CommandSurfaceTopologyDisconnectNodes::getHelpInformation() const
{
QString helpInfo =
(indent3 + getShortDescription() + "\n"
+ indent6 + parameters->getProgramNameWithoutPath() + " " + getOperationSwitch() + " \n"
+ indent9 + "<input-topology-file-name>\n"
+ indent9 + "<output-topology-file-name>\n"
+ indent9 + "<region-of-interest-file-name>\n"
+ indent9 + "\n"
+ indent9 + "Disconnect all nodes that are in the region of interest.\n"
+ indent9 + "\n");
return helpInfo;
}
/**
* execute the command.
*/
void
CommandSurfaceTopologyDisconnectNodes::executeCommand() throw (BrainModelAlgorithmException,
CommandException,
FileException,
ProgramParametersException,
StatisticException)
{
const QString inputTopologyFileName =
parameters->getNextParameterAsString("Input Topology File Name");
const QString outputTopologyFileName =
parameters->getNextParameterAsString("Output Topology File Name");
const QString regionOfInterestFileName =
parameters->getNextParameterAsString("Region of Interest File Name");
checkForExcessiveParameters();
//
// Read input topology file
//
TopologyFile topologyFile;
topologyFile.readFile(inputTopologyFileName);
//
// Read the region of interest file
//
NodeRegionOfInterestFile roiFile;
roiFile.readFile(regionOfInterestFileName);
//
// Disconnec nodes
//
topologyFile.disconnectNodesInRegionOfInterest(roiFile);
//
// Write the topology file
//
topologyFile.writeFile(outputTopologyFileName);
}
|
