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/*LICENSE_START*/
/*
* Copyright 1995-2002 Washington University School of Medicine
*
* http://brainmap.wustl.edu
*
* This file is part of CARET.
*
* CARET is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* CARET is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CARET; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*
*/
/*LICENSE_END*/
#include <iostream>
#include "CommandVolumeEulerCount.h"
#include "FileFilters.h"
#include "ProgramParameters.h"
#include "ScriptBuilderParameters.h"
#include "VolumeFile.h"
#include "CommandVolumeTopologyReport.h"
/**
* constructor.
*/
CommandVolumeEulerCount::CommandVolumeEulerCount()
: CommandBase("-volume-euler",
"VOLUME EULER COUNT")
{
}
/**
* destructor.
*/
CommandVolumeEulerCount::~CommandVolumeEulerCount()
{
}
/**
* get the script builder parameters.
*/
void
CommandVolumeEulerCount::getScriptBuilderParameters(ScriptBuilderParameters& paramsOut) const
{
paramsOut.clear();
/*
paramsOut.addFile("Input Volume File Name", FileFilters::getVolumeGenericFileFilter());
paramsOut.addInt("Min X", 1, 0, 100000);
paramsOut.addInt("Max X", 1, 0, 100000);
paramsOut.addInt("Min Y", 1, 0, 100000);
paramsOut.addInt("Max Y", 1, 0, 100000);
paramsOut.addInt("Min Z", 1, 0, 100000);
paramsOut.addInt("Max Z", 1, 0, 100000);
*/
}
/**
* obsolete message.
*/
QString
CommandVolumeEulerCount::obsoleteMessage() const {
CommandVolumeTopologyReport vtr;
QString msg = "This command ("
+ this->getOperationSwitch()
+ ") has been replaced by \""
+ vtr.getOperationSwitch()
+ "\".";
return msg;
}
/**
* get full help information.
*/
QString
CommandVolumeEulerCount::getHelpInformation() const
{
return obsoleteMessage();
/*
QString helpInfo =
(indent3 + getShortDescription() + "\n"
+ indent6 + parameters->getProgramNameWithoutPath() + " " + getOperationSwitch() + " \n"
+ indent9 + "<input-volume-file-name>\n"
+ indent9 + "<min-x> \n"
+ indent9 + "<max-x> \n"
+ indent9 + "<min-y> \n"
+ indent9 + "<max-y> \n"
+ indent9 + "<min-z> \n"
+ indent9 + "<max-z> \n"
+ indent9 + "\n"
+ indent9 + "Perform and print the Euler Counts for a segmentation volume\n"
+ indent9 + "\n");
return helpInfo;
*/
}
/**
* execute the command.
*/
void
CommandVolumeEulerCount::executeCommand() throw (BrainModelAlgorithmException,
CommandException,
FileException,
ProgramParametersException,
StatisticException)
{
throw CommandException(obsoleteMessage());
/*
//
// Get the parameters
//
const QString inputVolumeFileName =
parameters->getNextParameterAsString("Input Volume File Name");
const int minX =
parameters->getNextParameterAsInt("Minimum X");
const int maxX =
parameters->getNextParameterAsInt("Maximum X");
const int minY =
parameters->getNextParameterAsInt("Minimum Y");
const int maxY =
parameters->getNextParameterAsInt("Maximum Y");
const int minZ =
parameters->getNextParameterAsInt("Minimum Z");
const int maxZ =
parameters->getNextParameterAsInt("Maximum Z");
checkForExcessiveParameters();
//
// Read the input volume file
//
VolumeFile vf;
vf.readFile(inputVolumeFileName);
//
// Do the euler count
//
const int extent[6] = {
minX, maxX, minY, maxY, minZ, maxZ
};
int NumObjects, NumCavities, NumHandles, eulerCount;
vf.getEulerCountsForSegmentationSubVolume(NumObjects,
NumCavities,
NumHandles,
eulerCount,
extent);
//
// Print the counts
//
std::cout << "Num Objects " << NumObjects << std::endl;
std::cout << "Num Cavities " << NumCavities << std::endl;
std::cout << "Num Handles " << NumHandles << std::endl;
std::cout << "Euler Count " << eulerCount << std::endl;
*/
}
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