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/*LICENSE_START*/
/*
* Copyright 1995-2002 Washington University School of Medicine
*
* http://brainmap.wustl.edu
*
* This file is part of CARET.
*
* CARET is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* CARET is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CARET; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*
*/
/*LICENSE_END*/
#include "CommandVolumeImportRawFile.h"
#include "FileFilters.h"
#include "ProgramParameters.h"
#include "ScriptBuilderParameters.h"
#include "VolumeFile.h"
/**
* constructor.
*/
CommandVolumeImportRawFile::CommandVolumeImportRawFile()
: CommandBase("-volume-raw-import-file",
"VOLUME IMPORT RAW FILE")
{
}
/**
* destructor.
*/
CommandVolumeImportRawFile::~CommandVolumeImportRawFile()
{
}
/**
* get the script builder parameters.
*/
void
CommandVolumeImportRawFile::getScriptBuilderParameters(ScriptBuilderParameters& paramsOut) const
{
std::vector<QString> values, descriptions;
values.push_back("INT8"); descriptions.push_back("8-bit integer");
values.push_back("UINT8"); descriptions.push_back("8-bit unsigned integer");
values.push_back("INT16"); descriptions.push_back("16-bit signed integer");
values.push_back("UINT16"); descriptions.push_back("16-bit unsigned integer");
values.push_back("INT32"); descriptions.push_back("32-bit signed integer");
values.push_back("UINT32"); descriptions.push_back("32-bit unsigned integer");
values.push_back("FLOAT"); descriptions.push_back("Single Precision Floating Point");
values.push_back("DOUBLE"); descriptions.push_back("Double Precision Floating Point");
values.push_back("VIRGB"); descriptions.push_back("Voxel-Interleaved RGB (red-green-blue)");
values.push_back("SIRBB"); descriptions.push_back("Slice-Interleaved RGB (red-green-blue)");
paramsOut.clear();
paramsOut.addFile("Raw Data Volume File Name", FileFilters::getAnyFileFilter());
paramsOut.addFile("Output Volume File Name", FileFilters::getAnyFileFilter());
paramsOut.addInt("X-Dimension", 0, 0, 100000);
paramsOut.addInt("Y-Dimension", 0, 0, 100000);
paramsOut.addInt("Z-Dimension", 0, 0, 100000);
paramsOut.addListOfItems("Data Type", values, descriptions);
paramsOut.addBoolean("Byte Swap", false);
}
/**
* get full help information.
*/
QString
CommandVolumeImportRawFile::getHelpInformation() const
{
QString helpInfo =
(indent3 + getShortDescription() + "\n"
+ indent6 + parameters->getProgramNameWithoutPath() + " " + getOperationSwitch() + " \n"
+ indent9 + "<input-raw-volume-file-name>\n"
+ indent9 + "<output-volume-file-name>\n"
+ indent9 + "<x-dimension>\n"
+ indent9 + "<y-dimension>\n"
+ indent9 + "<z-dimension>\n"
+ indent9 + "<data-type>\n"
+ indent9 + "<byte-swap-flag>\n"
+ indent9 + "\n"
+ indent9 + "Import a raw data file into a volume file.\n"
+ indent9 + "\n"
+ indent9 + "\"data-type\" is one of:\n"
+ indent9 + " INT8 8-bit integer\n"
+ indent9 + " UINT8 8-bit unsigned integer\n"
+ indent9 + " INT16 16-bit signed integer\n"
+ indent9 + " UINT16 16-bit unsigned integer\n"
+ indent9 + " INT32 32-bit signed integer\n"
+ indent9 + " UINT32 32-bit unsigned integer\n"
+ indent9 + " FLOAT Single Precision Floating Point\n"
+ indent9 + " DOUBLE Double Precision Floating Point\n"
+ indent9 + " VIRGB Voxel-Interleaved RGB (red-green-blue)\n"
+ indent9 + " SIRBB Slice-Interleaved RGB (red-green-blue)\n"
+ indent9 + "\n");
return helpInfo;
}
/**
* execute the command.
*/
void
CommandVolumeImportRawFile::executeCommand() throw (BrainModelAlgorithmException,
CommandException,
FileException,
ProgramParametersException,
StatisticException)
{
const QString inputDataFileName =
parameters->getNextParameterAsString("Input Raw Volume File Name");
const QString outputVolumeFileName =
parameters->getNextParameterAsString("Output Volume File Name");
const int dimensions[3] = {
parameters->getNextParameterAsInt("X-Dimension"),
parameters->getNextParameterAsInt("Y-Dimension"),
parameters->getNextParameterAsInt("Z-Dimension")
};
const QString dataTypeName =
parameters->getNextParameterAsString("Data Type Name");
const bool byteSwapFlag =
parameters->getNextParameterAsBoolean("Byte Swap");
checkForExcessiveParameters();
VolumeFile::VOXEL_DATA_TYPE dataType = VolumeFile::VOXEL_DATA_TYPE_UNKNOWN;
if (dataTypeName == "INT8") {
dataType = VolumeFile::VOXEL_DATA_TYPE_CHAR;
}
else if (dataTypeName == "UINT8") {
dataType = VolumeFile::VOXEL_DATA_TYPE_CHAR_UNSIGNED;
}
else if (dataTypeName == "INT16") {
dataType = VolumeFile::VOXEL_DATA_TYPE_SHORT;
}
else if (dataTypeName == "UINT16") {
dataType = VolumeFile::VOXEL_DATA_TYPE_SHORT_UNSIGNED;
}
else if (dataTypeName == "INT32") {
dataType = VolumeFile::VOXEL_DATA_TYPE_INT;
}
else if (dataTypeName == "UINT32") {
dataType = VolumeFile::VOXEL_DATA_TYPE_INT_UNSIGNED;
}
else if (dataTypeName == "FLOAT") {
dataType = VolumeFile::VOXEL_DATA_TYPE_FLOAT;
}
else if (dataTypeName == "DOUBLE") {
dataType = VolumeFile::VOXEL_DATA_TYPE_DOUBLE;
}
else if (dataTypeName == "VIRGB") {
dataType = VolumeFile::VOXEL_DATA_TYPE_RGB_VOXEL_INTERLEAVED;
}
else if (dataTypeName == "SIRBB") {
dataType = VolumeFile::VOXEL_DATA_TYPE_RGB_SLICE_INTERLEAVED;
}
else {
throw CommandException("Invalid data type \""
+ dataTypeName
+ "\"");
}
VolumeFile volume;
const VolumeFile::ORIENTATION orient[3] = {
VolumeFile::ORIENTATION_UNKNOWN,
VolumeFile::ORIENTATION_UNKNOWN,
VolumeFile::ORIENTATION_UNKNOWN
};
const float org[3] = { 0.0, 0.0, 0.0 };
const float space[3] = { 1.0, 1.0, 1.0 };
volume.readFileVolumeRaw(inputDataFileName,
0,
dataType,
dimensions,
orient,
org,
space,
byteSwapFlag);
volume.writeFile(outputVolumeFileName);
}
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