1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
|
/*LICENSE_START*/
/*
* Copyright 1995-2002 Washington University School of Medicine
*
* http://brainmap.wustl.edu
*
* This file is part of CARET.
*
* CARET is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* CARET is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CARET; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*
*/
/*LICENSE_END*/
#include "CommandVolumeSculpt.h"
#include "FileFilters.h"
#include "ProgramParameters.h"
#include "ScriptBuilderParameters.h"
#include "VolumeFile.h"
/**
* constructor.
*/
CommandVolumeSculpt::CommandVolumeSculpt()
: CommandBase("-volume-sculpt",
"VOLUME SCULPT")
{
}
/**
* destructor.
*/
CommandVolumeSculpt::~CommandVolumeSculpt()
{
}
/**
* get the script builder parameters.
*/
void
CommandVolumeSculpt::getScriptBuilderParameters(ScriptBuilderParameters& paramsOut) const
{
std::vector<QString> values, descriptions;
values.push_back("AND"); descriptions.push_back("AND");
values.push_back("SEED-AND"); descriptions.push_back("SEED-AND");
values.push_back("AND-NOT"); descriptions.push_back("AND-NOT");
values.push_back("SEED-AND-NOT"); descriptions.push_back("SEED-AND-NOT");
paramsOut.clear();
paramsOut.addFile("Input Volume File Name", FileFilters::getVolumeGenericFileFilter());
paramsOut.addFile("Other Input Volume File Name", FileFilters::getVolumeGenericFileFilter());
paramsOut.addFile("Output Volume File Name", FileFilters::getVolumeGenericFileFilter());
paramsOut.addInt("i-minimum");
paramsOut.addInt("i-maximum");
paramsOut.addInt("j-minimum");
paramsOut.addInt("j-maximum");
paramsOut.addInt("k-minimum");
paramsOut.addInt("k-maximum");
paramsOut.addInt("i-seed");
paramsOut.addInt("j-seed");
paramsOut.addInt("k-seed");
paramsOut.addListOfItems("Mode", values, descriptions);
paramsOut.addInt("Number Of Steps");
}
/**
* get full help information.
*/
QString
CommandVolumeSculpt::getHelpInformation() const
{
QString helpInfo =
(indent3 + getShortDescription() + "\n"
+ indent6 + parameters->getProgramNameWithoutPath() + " " + getOperationSwitch() + " \n"
+ indent9 + "<input-volume-file-name>\n"
+ indent9 + "<input-other-volume-file-name>\n"
+ indent9 + "<output-volume-file-name>\n"
+ indent9 + "<i-minimum>\n"
+ indent9 + "<i-maximum>\n"
+ indent9 + "<j-minimum>\n"
+ indent9 + "<j-maximum>\n"
+ indent9 + "<k-minimum>\n"
+ indent9 + "<k-maximum>\n"
+ indent9 + "<i-seed>\n"
+ indent9 + "<j-seed>\n"
+ indent9 + "<k-seed>\n"
+ indent9 + "<mode>\n"
+ indent9 + "<num-steps>\n"
+ indent9 + "\n"
+ indent9 + "Sculpt a volume.\n"
+ indent9 + "\n"
+ indent9 + "\"mode\" is one of:\n"
+ indent9 + " AND\n"
+ indent9 + " SEED-AND\n"
+ indent9 + " AND-NOT\n"
+ indent9 + " SEED-AND-NOT\n"
+ indent9 + "\n");
return helpInfo;
}
/**
* execute the command.
*/
void
CommandVolumeSculpt::executeCommand() throw (BrainModelAlgorithmException,
CommandException,
FileException,
ProgramParametersException,
StatisticException)
{
const QString inputVolumeFileName =
parameters->getNextParameterAsString("Input Volume File Name");
const QString otherVolumeFileName =
parameters->getNextParameterAsString("Other Volume File Name");
QString outputVolumeFileName, outputVolumeFileLabel;
parameters->getNextParameterAsVolumeFileNameAndLabel("Output Volume File Name/Label",
outputVolumeFileName,
outputVolumeFileLabel);
int extent[6] = {
parameters->getNextParameterAsInt("i-minimum"),
parameters->getNextParameterAsInt("i-maximum"),
parameters->getNextParameterAsInt("j-minimum"),
parameters->getNextParameterAsInt("j-maximum"),
parameters->getNextParameterAsInt("k-minimum"),
parameters->getNextParameterAsInt("k-maximum")
};
int seed[3] = {
parameters->getNextParameterAsInt("i-seed"),
parameters->getNextParameterAsInt("j-seed"),
parameters->getNextParameterAsInt("k-seed")
};
const QString modeString =
parameters->getNextParameterAsString("Mode");
const int numberOfSteps =
parameters->getNextParameterAsInt("Number of Steps");
checkForExcessiveParameters();
VolumeFile::SCULPT_MODE mode;
if (modeString == "AND") {
mode = VolumeFile::SCULPT_MODE_AND;
}
else if (modeString == "SEED-AND") {
mode = VolumeFile::SCULPT_MODE_SEED_AND;
}
else if (modeString == "AND-NOT") {
mode = VolumeFile::SCULPT_MODE_AND_NOT;
}
else if (modeString == "SEED-AND-NOT") {
mode = VolumeFile::SCULPT_MODE_SEED_AND_NOT;
}
else {
throw CommandException("Invalid sculpt mode: " + modeString);
}
//
// Read the input file
//
VolumeFile volume;
volume.readFile(inputVolumeFileName);
//
// Read the other volume
//
VolumeFile otherVolume;
otherVolume.readFile(otherVolumeFileName);
//
// sculpt
//
volume.sculptVolume(mode, &otherVolume, numberOfSteps, seed, extent);
//
// Write the volume
//
writeVolumeFile(volume, outputVolumeFileName, outputVolumeFileLabel);
}
|
