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/*LICENSE_START*/
/*
* Copyright 1995-2002 Washington University School of Medicine
*
* http://brainmap.wustl.edu
*
* This file is part of CARET.
*
* CARET is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* CARET is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CARET; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*
*/
/*LICENSE_END*/
#include "BorderFile.h"
#include "CommandSurfaceBorderCreateAverage.h"
#include "FileFilters.h"
#include "ProgramParameters.h"
#include "ScriptBuilderParameters.h"
/**
* constructor.
*/
CommandSurfaceBorderCreateAverage::CommandSurfaceBorderCreateAverage()
: CommandBase("-surface-border-create-average",
"SURFACE BORDER CREATE AVERAGE")
{
}
/**
* destructor.
*/
CommandSurfaceBorderCreateAverage::~CommandSurfaceBorderCreateAverage()
{
}
/**
* get the script builder parameters.
*/
void
CommandSurfaceBorderCreateAverage::getScriptBuilderParameters(ScriptBuilderParameters& paramsOut) const
{
paramsOut.clear();
paramsOut.addFloat("Resampling Distance", 10.0);
paramsOut.addBoolean("Project to Sphere", false);
paramsOut.addFile("Output Border File Name", FileFilters::getBorderGenericFileFilter());
paramsOut.addMultipleFiles("Input Border Files", FileFilters::getBorderGenericFileFilter());
}
/**
* get full help information.
*/
QString
CommandSurfaceBorderCreateAverage::getHelpInformation() const
{
QString helpInfo =
(indent3 + getShortDescription() + "\n"
+ indent6 + parameters->getProgramNameWithoutPath() + " " + getOperationSwitch() + " \n"
+ indent9 + "<resampling-distance>\n"
+ indent9 + "<project-to-sphere>\n"
+ indent9 + "<output-border-file>\n"
+ indent9 + "<input-border-file-1>\n"
+ indent9 + "<input-border-file-2>\n"
+ indent9 + "[additional-input-border-files]\n"
+ indent9 + "\n"
+ indent9 + "Create an average border file from two or more border files.\n"
+ indent9 + "\n"
+ indent9 + "<project-to-sphere> is one of:\n"
+ indent9 + " true\n"
+ indent9 + " false\n"
+ indent9 + "\n");
return helpInfo;
}
/**
* execute the command.
*/
void
CommandSurfaceBorderCreateAverage::executeCommand() throw (BrainModelAlgorithmException,
CommandException,
FileException,
ProgramParametersException,
StatisticException)
{
//
// Get parameters
//
const float resamplingDistance =
parameters->getNextParameterAsFloat("Resampling Distance");
const bool projectToSphereFlag =
parameters->getNextParameterAsBoolean("Project to Sphere");
const QString outputBorderFileName =
parameters->getNextParameterAsString("Output Border File Name");
std::vector<QString> inputBorderFileNames;
inputBorderFileNames.push_back(
parameters->getNextParameterAsString("Input Border File Name 1"));
inputBorderFileNames.push_back(
parameters->getNextParameterAsString("Input Border File Name 2"));
while (parameters->getParametersAvailable()) {
inputBorderFileNames.push_back(
parameters->getNextParameterAsString("Input Border File Name"));
}
//
// Read the input border files
//
const int numBorderFiles = static_cast<int>(inputBorderFileNames.size());
std::vector<BorderFile*> inputBorderFiles;
for (int i = 0; i < numBorderFiles; i++) {
BorderFile* bf = new BorderFile;
try {
bf->readFile(inputBorderFileNames[i]);
inputBorderFiles.push_back(bf);
}
catch (FileException& e) {
for (unsigned int j = 0; j < inputBorderFiles.size(); j++) {
delete inputBorderFiles[j];
}
throw e;
}
}
//
// Create the average border
//
BorderFile averageBorderFile;
BorderFile::createAverageBorderFile(inputBorderFiles,
resamplingDistance,
projectToSphereFlag,
averageBorderFile);
//
// Save output border file
//
averageBorderFile.writeFile(outputBorderFileName);
//
// Free memory
//
for (unsigned int j = 0; j < inputBorderFiles.size(); j++) {
delete inputBorderFiles[j];
}
}
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