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/*LICENSE_START*/
/*
* Copyright 1995-2002 Washington University School of Medicine
*
* http://brainmap.wustl.edu
*
* This file is part of CARET.
*
* CARET is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* CARET is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CARET; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*
*/
/*LICENSE_END*/
#include "BorderProjectionFile.h"
#include "CommandSurfaceBorderFileMerge.h"
#include "FileFilters.h"
#include "ProgramParameters.h"
#include "ScriptBuilderParameters.h"
/**
* constructor.
*/
CommandSurfaceBorderFileMerge::CommandSurfaceBorderFileMerge()
: CommandBase("-surface-border-file-merge",
"SURFACE BORDER FILE MERGE")
{
}
/**
* destructor.
*/
CommandSurfaceBorderFileMerge::~CommandSurfaceBorderFileMerge()
{
}
/**
* get the script builder parameters.
*/
void
CommandSurfaceBorderFileMerge::getScriptBuilderParameters(ScriptBuilderParameters& paramsOut) const
{
paramsOut.clear();
paramsOut.addFile("Output Border Projection File",
FileFilters::getBorderProjectionFileFilter());
paramsOut.addFile("Input Border Projection File 1",
FileFilters::getBorderProjectionFileFilter());
paramsOut.addFile("Input Border Projection File 2",
FileFilters::getBorderProjectionFileFilter());
paramsOut.addVariableListOfParameters("Additional border projection files");
}
/**
* get full help information.
*/
QString
CommandSurfaceBorderFileMerge::getHelpInformation() const
{
QString helpInfo =
(indent3 + getShortDescription() + "\n"
+ indent6 + parameters->getProgramNameWithoutPath() + " " + getOperationSwitch() + " \n"
+ indent9 + "<output-border-projection-file-name>\n"
+ indent9 + "<input-border-projection-file-1-name>\n"
+ indent9 + "<input-border-projection-file-2-name>\n"
+ indent9 + "[additional-input-border-projections-file-names]\n"
+ indent9 + "\n"
+ indent9 + "Merge two or more border projections files into a\n"
+ indent9 + "single border projection file.\n"
+ indent9 + "\n");
return helpInfo;
}
/**
* execute the command.
*/
void
CommandSurfaceBorderFileMerge::executeCommand() throw (BrainModelAlgorithmException,
CommandException,
FileException,
ProgramParametersException,
StatisticException)
{
//
// Get required parameters
//
const QString outputBorderProjectionFileName =
parameters->getNextParameterAsString("Output Border Projection File");
std::vector<QString> inputBorderProjectionFileNames;
inputBorderProjectionFileNames.push_back(
parameters->getNextParameterAsString("Input Border Projection File 1 Name"));
inputBorderProjectionFileNames.push_back(
parameters->getNextParameterAsString("Input Border Projection File 2 Name"));
//
// Process optional parameters
//
while (parameters->getParametersAvailable()) {
inputBorderProjectionFileNames.push_back(
parameters->getNextParameterAsString("Additional Border Projection File Names"));
}
//
// Border projection file
//
BorderProjectionFile borderProjectionFile;
//
// loop through input border projections and append
//
std::vector<int> borderProjectionsForDeletion;
const int numInputFiles = static_cast<int>(inputBorderProjectionFileNames.size());
for (int i = 0; i < numInputFiles; i++) {
BorderProjectionFile bpf;
bpf.readFile(inputBorderProjectionFileNames[i]);
borderProjectionFile.append(bpf);
}
//
// Write the border projection file
//
borderProjectionFile.writeFile(outputBorderProjectionFileName);
}
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