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/*LICENSE_START*/
/*
* Copyright 1995-2002 Washington University School of Medicine
*
* http://brainmap.wustl.edu
*
* This file is part of CARET.
*
* CARET is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* CARET is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CARET; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*
*/
/*LICENSE_END*/
#include "CommandVolumeSetOrientation.h"
#include "FileFilters.h"
#include "ProgramParameters.h"
#include "ScriptBuilderParameters.h"
#include "VolumeFile.h"
/**
* constructor.
*/
CommandVolumeSetOrientation::CommandVolumeSetOrientation()
: CommandBase("-volume-set-orientation",
"VOLUME SET ORIENTATION")
{
}
/**
* destructor.
*/
CommandVolumeSetOrientation::~CommandVolumeSetOrientation()
{
}
/**
* get the script builder parameters.
*/
void
CommandVolumeSetOrientation::getScriptBuilderParameters(ScriptBuilderParameters& paramsOut) const
{
std::vector<QString> values, descriptions;
values.push_back("ANTERIOR"); descriptions.push_back("Anterior-to-Posterior");
values.push_back("INFERIOR"); descriptions.push_back("Interior-to-Superior");
values.push_back("LEFT"); descriptions.push_back("Left-to-Right");
values.push_back("POSTERIOR"); descriptions.push_back("Posterior-to-Inferior");
values.push_back("RIGHT"); descriptions.push_back("Right-to-Left");
values.push_back("SUPERIOR"); descriptions.push_back("Superior-to-Inferior");
values.push_back("UNKNOWN"); descriptions.push_back("Unknown");
paramsOut.clear();
paramsOut.addFile("Input Volume File Name", FileFilters::getVolumeGenericFileFilter());
paramsOut.addFile("Output Volume File Name", FileFilters::getVolumeGenericFileFilter());
paramsOut.addListOfItems("X-Axis-Orientation", values, descriptions);
paramsOut.addListOfItems("Y-Axis-Orientation", values, descriptions);
paramsOut.addListOfItems("Z-Axis-Orientation", values, descriptions);
}
/**
* get full help information.
*/
QString
CommandVolumeSetOrientation::getHelpInformation() const
{
QString helpInfo =
(indent3 + getShortDescription() + "\n"
+ indent6 + parameters->getProgramNameWithoutPath() + " " + getOperationSwitch() + " \n"
+ indent9 + "<input-volume-file-name>\n"
+ indent9 + "<output-volume-file-name>\n"
+ indent9 + "<x-axis-orientation>\n"
+ indent9 + "<y-axis-orientation>\n"
+ indent9 + "<z-axis-orientation>\n"
+ indent9 + "\n"
+ indent9 + "Set the orientation for the volume file\n"
+ indent9 + "\n"
+ indent9 + "\"axis-orientation\" values and descriptions:\n"
+ indent9 + " Value-Entered Description\n"
+ indent9 + " ------------- -----------\n"
+ indent9 + " ANTERIOR Anterior-to-Posterior\n"
+ indent9 + " INFERIOR Interior-to-Superior\n"
+ indent9 + " LEFT Left-to-Right\n"
+ indent9 + " POSTERIOR Posterior-to-Inferior\n"
+ indent9 + " RIGHT Right-to-Left\n"
+ indent9 + " SUPERIOR Superior-to-Inferior\n"
+ indent9 + " UNKNOWN Unknown\n"
+ indent9 + " \n"
+ indent9 + "\n");
return helpInfo;
}
/**
* execute the command.
*/
void
CommandVolumeSetOrientation::executeCommand() throw (BrainModelAlgorithmException,
CommandException,
FileException,
ProgramParametersException,
StatisticException)
{
//
// Get inputs
//
const QString inputVolumeFileName =
parameters->getNextParameterAsString("Input Volume File Name");
QString outputVolumeFileName, outputVolumeFileLabel;
parameters->getNextParameterAsVolumeFileNameAndLabel("Output Volume File Name/Label",
outputVolumeFileName,
outputVolumeFileLabel);
const QString orientString[3] = {
parameters->getNextParameterAsString("X-Axis-Orientation"),
parameters->getNextParameterAsString("Y-Axis-Orientation"),
parameters->getNextParameterAsString("Z-Axis-Orientation")
};
checkForExcessiveParameters();
//
// Convert orientation strings
//
VolumeFile::ORIENTATION orientation[3];
for (int i = 0; i < 3; i++) {
if (orientString[i] == "UNKNOWN") {
orientation[i] = VolumeFile::ORIENTATION_UNKNOWN;
}
else if (orientString[i] == "RIGHT") {
orientation[i] = VolumeFile::ORIENTATION_RIGHT_TO_LEFT;
}
else if (orientString[i] == "LEFT") {
orientation[i] = VolumeFile::ORIENTATION_LEFT_TO_RIGHT;
}
else if (orientString[i] == "POSTERIOR") {
orientation[i] = VolumeFile::ORIENTATION_POSTERIOR_TO_ANTERIOR;
}
else if (orientString[i] == "ANTERIOR") {
orientation[i] = VolumeFile::ORIENTATION_ANTERIOR_TO_POSTERIOR;
}
else if (orientString[i] == "INFERIOR") {
orientation[i] = VolumeFile::ORIENTATION_INFERIOR_TO_SUPERIOR;
}
else if (orientString[i] == "SUPERIOR") {
orientation[i] = VolumeFile::ORIENTATION_SUPERIOR_TO_INFERIOR;
}
else {
throw CommandException("Invalid orientation axis \""
+ orientString[i]
+ "\"");
}
}
//
// Read the input file
//
VolumeFile volume;
volume.readFile(inputVolumeFileName);
//
// set the orientation
//
volume.setOrientation(orientation);
//
// Write the volume
//
writeVolumeFile(volume, outputVolumeFileName, outputVolumeFileLabel);
}
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