File: CommandVolumeVectorCombine.cxx

package info (click to toggle)
caret 5.6.4~dfsg.1-3
  • links: PTS, VCS
  • area: main
  • in suites: jessie, jessie-kfreebsd, wheezy
  • size: 31,904 kB
  • ctags: 28,901
  • sloc: cpp: 378,050; python: 6,718; ansic: 5,507; makefile: 333; sh: 46
file content (164 lines) | stat: -rw-r--r-- 5,424 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
/*LICENSE_START*/
/*
 *  Copyright 1995-2002 Washington University School of Medicine
 *
 *  http://brainmap.wustl.edu
 *
 *  This file is part of CARET.
 *
 *  CARET is free software; you can redistribute it and/or modify
 *  it under the terms of the GNU General Public License as published by
 *  the Free Software Foundation; either version 2 of the License, or
 *  (at your option) any later version.
 *
 *  CARET is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU General Public License for more details.
 *
 *  You should have received a copy of the GNU General Public License
 *  along with CARET; if not, write to the Free Software
 *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
 *
 */
/*LICENSE_END*/

#include "CommandVolumeVectorCombine.h"
#include "FileFilters.h"
#include "ProgramParameters.h"
#include "ScriptBuilderParameters.h"
#include "SureFitVectorFile.h"
#include "VolumeFile.h"

/**
 * constructor.
 */
CommandVolumeVectorCombine::CommandVolumeVectorCombine()
   : CommandBase("-volume-vector-combine",
                 "VOLUME VECTOR FILES COMBINE")
{
}

/**
 * destructor.
 */
CommandVolumeVectorCombine::~CommandVolumeVectorCombine()
{
}

/**
 * get the script builder parameters.
 */
void 
CommandVolumeVectorCombine::getScriptBuilderParameters(ScriptBuilderParameters& paramsOut) const
{
   std::vector<QString> values, descriptions;
   values.push_back("DOT_SQRT_RECT_MINUS");   descriptions.push_back("DOT_SQRT_RECT_MINUS");
   values.push_back("2_VEC_NORMAL");   descriptions.push_back("2_VEC_NORMAL");
   values.push_back("2_VEC");   descriptions.push_back("2_VEC");
   
   paramsOut.clear();
   paramsOut.addFile("Input Vector File 1 Name", FileFilters::getSureFitVectorFileFilter());
   paramsOut.addFile("Input Vector File 2 Name", FileFilters::getSureFitVectorFileFilter());
   paramsOut.addFile("Output Vector File Name", FileFilters::getSureFitVectorFileFilter());
   paramsOut.addFile("Mask Volume File Name", FileFilters::getVolumeGenericFileFilter());
   paramsOut.addListOfItems("Operation", values, descriptions);
   paramsOut.addBoolean("Mask Flag");
}

/**
 * get full help information.
 */
QString 
CommandVolumeVectorCombine::getHelpInformation() const
{
   QString helpInfo =
      (indent3 + getShortDescription() + "\n"
       + indent6 + parameters->getProgramNameWithoutPath() + " " + getOperationSwitch() + "  \n"
       + indent9 + "<input-vector-file-1-name>\n"
       + indent9 + "<input-vector-file-2-name>\n"
       + indent9 + "<output-vector-file-name>\n"
       + indent9 + "<mask-volume-file-name>\n"
       + indent9 + "<operation>\n"
       + indent9 + "<mask-flag>\n"
       + indent9 + "\n"
       + indent9 + "Combine vector files.\n"
       + indent9 + "   \"operation\" is one of:\n"
       + indent9 + "      DOT_SQRT_RECT_MINUS\n"
       + indent9 + "      2_VEC_NORMAL\n"
       + indent9 + "      2_VEC\n"
       + indent9 + "\n");
      
   return helpInfo;
}

/**
 * execute the command.
 */
void 
CommandVolumeVectorCombine::executeCommand() throw (BrainModelAlgorithmException,
                                     CommandException,
                                     FileException,
                                     ProgramParametersException,
                                     StatisticException)
{
   const QString inputVectorFile1Name =
      parameters->getNextParameterAsString("Input Vector File 1 Name");
   const QString inputVectorFile2Name =
      parameters->getNextParameterAsString("Input Vector File 2 Name");
   const QString outputVectorFileName =
      parameters->getNextParameterAsString("Output Vector File Name");
   const QString maskVolumeFileName =
      parameters->getNextParameterAsString("Mask Volume File Name");
   const QString operationString =
      parameters->getNextParameterAsString("Operation").toUpper();
   const bool maskFlag =
      parameters->getNextParameterAsBoolean("Mask Flag");
   checkForExcessiveParameters();
      
   SureFitVectorFile::COMBINE_OPERATION operation;
   if (operationString == "DOT_SQRT_RECT_MINUS") {
      operation = SureFitVectorFile::COMBINE_OPERATION_DOT_SQRT_RECT_MINUS;
   }
   else if (operationString == "2_VEC_NORMAL") {
      operation = SureFitVectorFile::COMBINE_OPERATION_2_VEC_NORMAL;
   }
   else if (operationString == "2_VEC") {
      operation = SureFitVectorFile::COMBINE_OPERATION_2_VEC;
   }
   else {
      throw CommandException("Invalid operation \"" + operationString + "\"");
   }
   
   //
   // Read the input files
   //
   SureFitVectorFile vector1;
   vector1.readFile(inputVectorFile1Name);
   SureFitVectorFile vector2;
   vector2.readFile(inputVectorFile2Name);
   VolumeFile maskVolume;
   maskVolume.readFile(maskVolumeFileName);
   
   //
   // Create the output vector file
   //
   SureFitVectorFile outputVector = vector1;
   
   //
   // combine vectors
   //
   SureFitVectorFile::combineVectorFiles(maskFlag,
                                     operation,
                                     &vector1,
                                     &vector2,
                                     &maskVolume,
                                     &outputVector);
   //
   // Write the vector file
   //
   outputVector.writeFile(outputVectorFileName);
}