File: BrainModelSurfaceMetricKruskalWallisRankTest.h

package info (click to toggle)
caret 5.6.4~dfsg.1-3
  • links: PTS, VCS
  • area: main
  • in suites: jessie, jessie-kfreebsd, wheezy
  • size: 31,904 kB
  • ctags: 28,901
  • sloc: cpp: 378,050; python: 6,718; ansic: 5,507; makefile: 333; sh: 46
file content (85 lines) | stat: -rw-r--r-- 3,675 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85

#ifndef __BRAIN_MODEL_SURFACE_METRIC_KRUSKAL_WALLIS_RANK_TEST_H__
#define __BRAIN_MODEL_SURFACE_METRIC_KRUSKAL_WALLIS_RANK_TEST_H__

/*LICENSE_START*/
/*
 *  Copyright 1995-2002 Washington University School of Medicine
 *
 *  http://brainmap.wustl.edu
 *
 *  This file is part of CARET.
 *
 *  CARET is free software; you can redistribute it and/or modify
 *  it under the terms of the GNU General Public License as published by
 *  the Free Software Foundation; either version 2 of the License, or
 *  (at your option) any later version.
 *
 *  CARET is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU General Public License for more details.
 *
 *  You should have received a copy of the GNU General Public License
 *  along with CARET; if not, write to the Free Software
 *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
 *
 */
/*LICENSE_END*/

#include "BrainModelSurfaceMetricFindClustersBase.h"

class MetricFile;

/// class for performing a krusk-wallis (non-parametric ANOVA) on metric files
class BrainModelSurfaceMetricKruskalWallisRankTest : public BrainModelSurfaceMetricFindClustersBase
{
   public:
      // constructor
      BrainModelSurfaceMetricKruskalWallisRankTest(BrainSet* bs,
                                         const std::vector<QString>& inputMetricFileNamesIn,
                                         const QString& fiducialCoordFileNameIn,
                                         const QString& openTopoFileNameIn,
                                         const QString& areaCorrectionShapeFileNameIn,
                                         const QString& fMapFileNameIn,
                                         const QString& shuffledFMapFileNameIn,
                                         const QString& clustersPaintFileNameIn,
                                         const QString& clustersMetricFileNameIn,
                                         const QString& reportFileNameIn,
                                         const int areaCorrectionShapeFileColumnIn,
                                         const int iterationsIn,
                                         const float positiveThreshIn,
                                         const float pValueIn,
                                         const bool doFMapDOFIn,
                                         const bool doFMapPValueIn,
                                         const int numberOfThreadsIn);
                                         
      // destructor
      ~BrainModelSurfaceMetricKruskalWallisRankTest();
      
      
   protected:
      /// must be implemented by subclasses
      void executeClusterSearch() throw (BrainModelAlgorithmException);
      
      /// perform an F-Test on a set of metric files
      void performFTest(const std::vector<MetricFile*>& metricFiles,
                         MetricFile* outputMetricFile,
                         const int fStatisticColumn,
                         const int dofColumn,
                         const int pValueColumn) throw (BrainModelAlgorithmException);
                
      /// the input metric file names
      std::vector<QString> inputMetricFileNames;
      
      /// the input metric files
      std::vector<MetricFile*> inputMetricFiles;
      
      /// metric files that are output of shuffling
      std::vector<MetricFile*> shuffledMetricFiles;
      
      /// interations for generating shuffled F-Map file
      int iterations;
};

#endif // __BRAIN_MODEL_SURFACE_METRIC_KRUSKAL_WALLIS_RANK_TEST_H__