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/*LICENSE_START*/
/*
* Copyright 1995-2002 Washington University School of Medicine
*
* http://brainmap.wustl.edu
*
* This file is part of CARET.
*
* CARET is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* CARET is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CARET; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*
*/
/*LICENSE_END*/
#include <cmath>
#include <QStringList>
#include "BrainModelSurface.h"
#include "BrainModelSurfaceROINodeSelection.h"
#include "BrainModelSurfaceROIPaintReport.h"
#include "BrainModelSurfaceROITextReport.h"
#include "BrainSet.h"
#include "FileUtilities.h"
#include "LatLonFile.h"
#include "MetricFile.h"
#include "PaintFile.h"
#include "SurfaceShapeFile.h"
/**
* constructor.
*/
BrainModelSurfaceROIPaintReport::BrainModelSurfaceROIPaintReport(BrainSet* bs,
BrainModelSurface* bmsIn,
BrainModelSurfaceROINodeSelection* surfaceROIIn,
MetricFile* metricFileIn,
const std::vector<bool>& selectedMetricColumnsForReportIn,
MetricFile* shapeFileIn,
const std::vector<bool>& selectedShapeColumnsForReportIn,
PaintFile* paintFileIn,
const std::vector<bool>& selectedPaintColumnsForReportIn,
const int paintRegionColumnNumberIn,
LatLonFile* latLonFileIn,
const int latLonFileColumnIn,
MetricFile* metricCorrectionFileIn,
const int metricCorrectionColumnIn,
const bool semicolonSeparateReportFlagIn)
: BrainModelSurfaceROIOperation(bs, bmsIn, surfaceROIIn)
{
reportLatLonFile = NULL;
reportMetricFile = NULL;
reportShapeFile = NULL;
reportPaintFile = NULL;
reportMetricCorrectionFile = NULL;
reportMetricFile = metricFileIn;
selectedMetricColumnsForReport = selectedMetricColumnsForReportIn;
reportShapeFile = shapeFileIn;
selectedShapeColumnsForReport = selectedShapeColumnsForReportIn;
reportPaintFile = paintFileIn;
selectedPaintColumnsForReport = selectedPaintColumnsForReportIn;
paintRegionColumnNumber = paintRegionColumnNumberIn;
reportLatLonFile = latLonFileIn;
reportLatLonFileColumn = latLonFileColumnIn;
setHeaderText("Paint Region Report");
reportMetricCorrectionFile = metricCorrectionFileIn;
metricCorrectionColumn = metricCorrectionColumnIn;
semicolonSeparateReportFlag = semicolonSeparateReportFlagIn;
}
/**
* destructor.
*/
BrainModelSurfaceROIPaintReport::~BrainModelSurfaceROIPaintReport()
{
}
/**
* execute the operation.
*/
void
BrainModelSurfaceROIPaintReport::executeOperation() throw (BrainModelAlgorithmException)
{
reportText = "";
if (reportPaintFile->getNumberOfColumns() <= 0) {
throw BrainModelAlgorithmException("Paint file is empty.");
}
if ((paintRegionColumnNumber < 0) ||
(paintRegionColumnNumber >= reportPaintFile->getNumberOfColumns())) {
throw BrainModelAlgorithmException("Region paint column is invalid.");
}
QString paintReportText;
//
// Get all of the paint names for the column
//
std::vector<int> paintIndices;
reportPaintFile->getPaintNamesForColumn(paintRegionColumnNumber, paintIndices);
//
// process each paint index
//
const int numPaintIndices = static_cast<int>(paintIndices.size());
for (int i = 0; i < numPaintIndices; i++) {
//
// Get the index
//
const int paintIndex = paintIndices[i];
//
// Save the selected nodes
//
const int numNodes = reportPaintFile->getNumberOfNodes();
std::vector<int> savedNodeInROI(numNodes, 0);
//
// Limit nodes in ROI to those with valid paint column
//
for (int j = 0; j < numNodes; j++) {
savedNodeInROI[j] = operationSurfaceROI->getNodeSelected(j);
if (operationSurfaceROI->getNodeSelected(j)) {
operationSurfaceROI->setNodeSelected(j, false);
if (reportPaintFile->getPaint(j, paintRegionColumnNumber) == paintIndex) {
operationSurfaceROI->setNodeSelected(j, true);
}
}
}
//
// Run the report for this paint
//
const QString str = ("Paint Subregion Name: "
+ reportPaintFile->getPaintNameFromIndex(paintIndex));
if (operationSurfaceROI->getNumberOfNodesSelected() > 0) {
reportText = "";
BrainModelSurfaceROITextReport roiReport(brainSet,
bms,
operationSurfaceROI,
reportMetricFile,
selectedMetricColumnsForReport,
reportShapeFile,
selectedShapeColumnsForReport,
reportPaintFile,
selectedPaintColumnsForReport,
reportLatLonFile,
0,
str,
reportMetricFile,
metricCorrectionColumn,
semicolonSeparateReportFlag);
try {
roiReport.execute();
paintReportText += roiReport.getReportText();
}
catch (BrainModelAlgorithmException& e) {
throw BrainModelAlgorithmException(e.whatQString());
}
}
else {
QString s = str;
s += "\n No nodes in ROI\n\n";
paintReportText += s;
}
//
// Restore the selected nodes
//
for (int j = 0; j < numNodes; j++) {
operationSurfaceROI->setNodeSelected(j, (savedNodeInROI[j] != 0));
}
}
reportText = paintReportText;
}
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