File: BrainModelSurfaceROIProbAtlasOverlapReport.h

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#ifndef __BRAIN_MODEL_SURFACE_ROI_PROB_ATLAS_OVERLAP_REPORT_H__
#define __BRAIN_MODEL_SURFACE_ROI_PROB_ATLAS_OVERLAP_REPORT_H__

/*LICENSE_START*/
/*
 *  Copyright 1995-2002 Washington University School of Medicine
 *
 *  http://brainmap.wustl.edu
 *
 *  This file is part of CARET.
 *
 *  CARET is free software; you can redistribute it and/or modify
 *  it under the terms of the GNU General Public License as published by
 *  the Free Software Foundation; either version 2 of the License, or
 *  (at your option) any later version.
 *
 *  CARET is distributed in the hope that it will be useful,
 *  but WITHOUT ANY WARRANTY; without even the implied warranty of
 *  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 *  GNU General Public License for more details.
 *
 *  You should have received a copy of the GNU General Public License
 *  along with CARET; if not, write to the Free Software
 *  Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA  02111-1307  USA
 *
 */
/*LICENSE_END*/

#include "BrainModelSurfaceROIOperation.h"

class ProbabilisticAtlasFile;

/// class for computing integrated folding index
class BrainModelSurfaceROIProbAtlasOverlapReport : public BrainModelSurfaceROIOperation {
   public:
      // constructor
      BrainModelSurfaceROIProbAtlasOverlapReport(BrainSet* bs,
                           BrainModelSurface* bmsIn,
                           BrainModelSurfaceROINodeSelection* inputSurfaceROIIn,
                           ProbabilisticAtlasFile* probAtlasFileIn,
                           const QString& headerTextIn,
                           const bool tabSeparateReportFlagIn);
      // destructor
      ~BrainModelSurfaceROIProbAtlasOverlapReport();
      
   protected:
      // execute the operation
      virtual void executeOperation() throw (BrainModelAlgorithmException);

      /// the surface shape file
      ProbabilisticAtlasFile* probAtlasFile;
      
      /// semicolon separate the report
      bool semicolonSeparateReportFlag;
};

#endif // __BRAIN_MODEL_SURFACE_ROI_PROB_ATLAS_OVERLAP_REPORT_H__