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/*LICENSE_START*/
/*
* Copyright 1995-2011 Washington University School of Medicine
*
* http://brainmap.wustl.edu
*
* This file is part of CARET.
*
* CARET is free software; you can redistribute it and/or modify
* it under the terms of the GNU General Public License as published by
* the Free Software Foundation; either version 2 of the License, or
* (at your option) any later version.
*
* CARET is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with CARET; if not, write to the Free Software
* Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
*
*/
/*LICENSE_END*/
#ifndef __CIFTI_XML_ELEMENTS
#define __CIFTI_XML_ELEMENTS
#include <QtCore>
#include <vector>
#include "nifti2.h"
/* Cifti Defines */
enum ModelType {
CIFTI_MODEL_TYPE_SURFACE=1,
CIFTI_MODEL_TYPE_VOXELS=2
};
enum IndicesMapToDataType {
CIFTI_INDEX_TYPE_BRAIN_MODELS=1,
CIFTI_INDEX_TYPE_FIBERS=2,
CIFTI_INDEX_TYPE_PARCELS=3,
CIFTI_INDEX_TYPE_TIME_POINTS=4
};
typedef unsigned long long voxelIndexType;
class CiftiBrainModelElement {
public:
//CiftiBrainModelElement();
unsigned long long m_indexOffset;
unsigned long long m_indexCount;
ModelType m_modelType;
QString m_brainStructure;
unsigned long long m_surfaceNumberOfNodes;
//children
std::vector<unsigned long long> m_nodeIndices;
std::vector<voxelIndexType> m_voxelIndicesIJK;
};
class CiftiMatrixIndicesMapElement
{
public:
CiftiMatrixIndicesMapElement()
{
m_timeStep = -1.0;
m_timeStepUnits = -1;
}
std::vector<int> m_appliesToMatrixDimension;
IndicesMapToDataType m_indicesMapToDataType;
double m_timeStep;
int m_timeStepUnits;
std::vector<CiftiBrainModelElement> m_brainModels;
};
class CiftiLabelElement {
public:
CiftiLabelElement()
{
m_red = m_green = m_blue = m_alpha = m_x = m_y = m_z = 0.0;
}
unsigned long long m_key;
float m_red;
float m_green;
float m_blue;
float m_alpha;
float m_x;
float m_y;
float m_z;
QString m_text;
};
class TransformationMatrixVoxelIndicesIJKtoXYZ
{
public:
unsigned long m_dataSpace;
unsigned long m_transformedSpace;
unsigned long m_unitsXYZ;
float m_transform[16];
};
class CiftiVolume {
public:
std::vector<TransformationMatrixVoxelIndicesIJKtoXYZ> m_transformationMatrixVoxelIndicesIJKtoXYZ;
unsigned int m_volumeDimensions[3];
};
class CiftiMatrixElement {
public:
std::vector<CiftiLabelElement> m_labelTable;//TODO, this may be better as a hash
QHash<QString, QString> m_userMetaData; //user meta data
std::vector<CiftiMatrixIndicesMapElement> m_matrixIndicesMap;
std::vector<CiftiVolume> m_volume;
};
class CiftiRootElement {
public:
QString m_version;
unsigned long m_numberOfMatrices;
std::vector<CiftiMatrixElement> m_matrices;
};
#endif //__CIFTI_ELEMENTS
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