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//# SSMBase.cc: Base class of the Standard Storage Manager
//# Copyright (C) 2000,2001,2002,2005
//# Associated Universities, Inc. Washington DC, USA.
//#
//# This library is free software; you can redistribute it and/or modify it
//# under the terms of the GNU Library General Public License as published by
//# the Free Software Foundation; either version 2 of the License, or (at your
//# option) any later version.
//#
//# This library is distributed in the hope that it will be useful, but WITHOUT
//# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
//# FITNESS FOR A PARTICULAR PURPOSE. See the GNU Library General Public
//# License for more details.
//#
//# You should have received a copy of the GNU Library General Public License
//# along with this library; if not, write to the Free Software Foundation,
//# Inc., 675 Massachusettes Ave, Cambridge, MA 02139, USA.
//#
//# Correspondence concerning AIPS++ should be addressed as follows:
//# Internet email: aips2-request@nrao.edu.
//# Postal address: AIPS++ Project Office
//# National Radio Astronomy Observatory
//# 520 Edgemont Road
//# Charlottesville, VA 22903-2475 USA
//#
//# $Id$
#include <casacore/tables/DataMan/SSMBase.h>
#include <casacore/tables/DataMan/SSMColumn.h>
#include <casacore/tables/DataMan/SSMDirColumn.h>
#include <casacore/tables/DataMan/SSMIndColumn.h>
#include <casacore/tables/DataMan/SSMIndStringColumn.h>
#include <casacore/tables/DataMan/SSMIndex.h>
#include <casacore/tables/DataMan/SSMStringHandler.h>
#include <casacore/tables/DataMan/StArrayFile.h>
#include <casacore/tables/Tables/Table.h>
#include <casacore/casa/Containers/BlockIO.h>
#include <casacore/casa/Containers/Record.h>
#include <casacore/casa/Utilities/ValType.h>
#include <casacore/casa/Utilities/Assert.h>
#include <casacore/casa/IO/BucketCache.h>
#include <casacore/casa/IO/BucketFile.h>
#include <casacore/casa/IO/AipsIO.h>
#include <casacore/casa/IO/MemoryIO.h>
#include <casacore/casa/IO/CanonicalIO.h>
#include <casacore/casa/IO/LECanonicalIO.h>
#include <casacore/casa/IO/FilebufIO.h>
#include <casacore/casa/OS/CanonicalConversion.h>
#include <casacore/casa/OS/DOos.h>
#include <casacore/casa/BasicMath/Math.h>
#include <casacore/tables/DataMan/DataManError.h>
#include <casacore/casa/iostream.h>
namespace casacore { //# NAMESPACE CASACORE - BEGIN
SSMBase::SSMBase (Int aBucketSize, uInt aCacheSize)
: DataManager (),
itsDataManName ("SSM"),
itsIosFile (0),
itsNrRows (0),
itsCache (0),
itsFile (0),
itsStringHandler (0),
itsPersCacheSize (std::max(aCacheSize,uInt(2))),
itsCacheSize (0),
itsNrBuckets (0),
itsNrIdxBuckets (0),
itsFirstIdxBucket (-1),
itsIdxBucketOffset (0),
itsLastStringBucket (-1),
itsIndexLength (0),
itsFreeBucketsNr (0),
itsFirstFreeBucket (-1),
itsBucketSize (0),
itsBucketRows (0),
isDataChanged (False)
{
if (aBucketSize < 0) {
itsBucketRows = -aBucketSize;
} else if (aBucketSize == 0) {
itsBucketRows = 32;
} else {
itsBucketSize = aBucketSize;
}
}
SSMBase::SSMBase (const String& aDataManName,
Int aBucketSize, uInt aCacheSize)
: DataManager (),
itsDataManName (aDataManName),
itsIosFile (0),
itsNrRows (0),
itsCache (0),
itsFile (0),
itsStringHandler (0),
itsPersCacheSize (std::max(aCacheSize,uInt(2))),
itsCacheSize (0),
itsNrBuckets (0),
itsNrIdxBuckets (0),
itsFirstIdxBucket (-1),
itsIdxBucketOffset (0),
itsLastStringBucket (-1),
itsIndexLength (0),
itsFreeBucketsNr (0),
itsFirstFreeBucket (-1),
itsBucketSize (0),
itsBucketRows (0),
isDataChanged (False)
{
if (aBucketSize < 0) {
itsBucketRows = -aBucketSize;
} else if (aBucketSize == 0) {
itsBucketRows = 32;
} else {
itsBucketSize = aBucketSize;
}
}
SSMBase::SSMBase (const String& aDataManName,
const Record& spec)
: DataManager (),
itsDataManName (aDataManName),
itsIosFile (0),
itsNrRows (0),
itsCache (0),
itsFile (0),
itsStringHandler (0),
itsPersCacheSize (2),
itsCacheSize (0),
itsNrBuckets (0),
itsNrIdxBuckets (0),
itsFirstIdxBucket (-1),
itsIdxBucketOffset (0),
itsLastStringBucket (-1),
itsIndexLength (0),
itsFreeBucketsNr (0),
itsFirstFreeBucket (-1),
itsBucketSize (0),
itsBucketRows (0),
isDataChanged (False)
{
// Get nr of rows per bucket if defined.
if (spec.isDefined ("BUCKETROWS")) {
itsBucketRows = spec.asInt ("BUCKETROWS");
}
// If no bucketrows, get bucketsize if defined.
// Otherwise set bucketrows to default value.
if (itsBucketRows == 0) {
if (spec.isDefined ("BUCKETSIZE")) {
itsBucketSize = spec.asInt ("BUCKETSIZE");
}
if (itsBucketSize == 0) {
itsBucketRows = 32;
}
}
if (spec.isDefined ("PERSCACHESIZE")) {
itsPersCacheSize = max(2, spec.asInt ("PERSCACHESIZE"));
}
}
SSMBase::SSMBase (const SSMBase& that)
: DataManager (),
itsDataManName (that.itsDataManName),
itsIosFile (0),
itsNrRows (0),
itsCache (0),
itsFile (0),
itsStringHandler (0),
itsPersCacheSize (that.itsPersCacheSize),
itsCacheSize (0),
itsNrBuckets (0),
itsNrIdxBuckets (0),
itsFirstIdxBucket (-1),
itsIdxBucketOffset (0),
itsLastStringBucket (-1),
itsIndexLength (0),
itsFreeBucketsNr (0),
itsFirstFreeBucket (-1),
itsBucketSize (that.itsBucketSize),
itsBucketRows (that.itsBucketRows),
isDataChanged (False)
{}
SSMBase::~SSMBase()
{
for (uInt i=0; i<ncolumn(); i++) {
delete itsPtrColumn[i];
}
for (uInt i=0; i<itsPtrIndex.nelements(); i++) {
delete itsPtrIndex[i];
}
delete itsCache;
delete itsFile;
delete itsIosFile;
delete itsStringHandler;
}
DataManager* SSMBase::clone() const
{
return new SSMBase (*this);
}
String SSMBase::dataManagerType() const
{
return "StandardStMan";
}
String SSMBase::dataManagerName() const
{
return itsDataManName;
}
Record SSMBase::dataManagerSpec() const
{
Record rec = getProperties();
rec.define ("BUCKETSIZE", Int(itsBucketSize));
rec.define ("PERSCACHESIZE", Int(itsPersCacheSize));
rec.define ("IndexLength", Int(itsIndexLength));
return rec;
}
Record SSMBase::getProperties() const
{
// Make sure the cache is initialized, so the header has certainly been read.
const_cast<SSMBase*>(this)->getCache();
Record rec;
rec.define ("MaxCacheSize", Int(itsCacheSize));
return rec;
}
void SSMBase::setProperties (const Record& rec)
{
if (rec.isDefined("MaxCacheSize")) {
setCacheSize (rec.asInt("MaxCacheSize"), False);
}
}
void SSMBase::clearCache()
{
if (itsCache != 0) {
itsStringHandler->flush();
itsCache->clear();
}
}
void SSMBase::showBaseStatistics (ostream& anOs) const
{
anOs << "StandardStMan Base statistics:" << endl;
anOs << "Nr of columns : " << ncolumn() << endl ;
anOs << "Nr of rows in the columns : " << itsNrRows << endl;
for (uInt i=0;i<ncolumn();i++) {
anOs << " ColIndex["<<i<<"] : " << itsColIndexMap[i];
anOs << " ColOffset["<<i<<"] : " << itsColumnOffset[i] << endl;
}
anOs << "CacheSize : " << itsCacheSize << endl ;
anOs << "Size of buckets : " << itsBucketSize << endl ;
anOs << "Total buckets : " << itsNrBuckets << endl ;
anOs << "Total Index buckets : " << itsNrIdxBuckets << endl ;
anOs << "1st Index bucket : " << itsFirstIdxBucket << endl ;
anOs << "Index bucket offset : " << itsIdxBucketOffset << endl ;
anOs << "last String bucket used : " << itsLastStringBucket << endl ;
anOs << "Total free buckets : " << itsFreeBucketsNr << endl ;
anOs << "1st free bucket : " << itsFirstFreeBucket << endl ;
anOs << endl;
}
void SSMBase::showCacheStatistics (ostream& anOs) const
{
if (itsCache != 0) {
anOs << "StandardStMan cache statistics:" << endl;
itsCache->showStatistics (anOs);
anOs << endl;
}
}
void SSMBase::showIndexStatistics (ostream & anOs) const
{
uInt aNrIdx=itsPtrIndex.nelements();
for (uInt i=0; i < aNrIdx; i++) {
anOs << "StandardStMan index: " << i << " statistics:" << endl;
itsPtrIndex[i]->showStatistics (anOs);
anOs << endl;
}
}
DataManagerColumn* SSMBase::makeScalarColumn (const String&,
int aDataType,
const String&)
{
//# Extend itsPtrColumn block if needed.
if (ncolumn() >= itsPtrColumn.nelements()) {
itsPtrColumn.resize (itsPtrColumn.nelements() + 32);
}
SSMColumn* aColumn = new SSMColumn (this, aDataType, ncolumn());
itsPtrColumn[ncolumn()] = aColumn;
return aColumn;
}
DataManagerColumn* SSMBase::makeDirArrColumn (const String&,
int aDataType,
const String&)
{
//# Extend itsPtrColumn block if needed.
if (ncolumn() >= itsPtrColumn.nelements()) {
itsPtrColumn.resize (itsPtrColumn.nelements() + 32);
}
SSMColumn* aColumn = new SSMDirColumn (this, aDataType, ncolumn());
itsPtrColumn[ncolumn()] = aColumn;
return aColumn;
}
DataManagerColumn* SSMBase::makeIndArrColumn (const String&,
int aDataType,
const String&)
{
//# Extend itsPtrColumn block if needed.
if (ncolumn() >= itsPtrColumn.nelements()) {
itsPtrColumn.resize (itsPtrColumn.nelements() + 32);
}
SSMColumn* aColumn;
if (aDataType == TpString) {
aColumn = new SSMIndStringColumn (this, aDataType, ncolumn());
} else {
aColumn = new SSMIndColumn (this, aDataType, ncolumn());
}
itsPtrColumn[ncolumn()] = aColumn;
return aColumn;
}
DataManager* SSMBase::makeObject (const String& group, const Record& spec)
{
// This function is called when reading a table back.
// Construct it with the default bucket size and cache size.
return new SSMBase (group, spec);
}
void SSMBase::setCacheSize (uInt aCacheSize, Bool canExceedNrBuckets)
{
itsCacheSize = max(aCacheSize,2u);
// Limit the cache size if needed.
if (!canExceedNrBuckets && itsCacheSize > getCache().nBucket()) {
itsCacheSize = itsCache->nBucket();
}
if (itsCache != 0) {
itsCache->resize (itsCacheSize);
}
}
void SSMBase::makeCache()
{
if (itsCache == 0) {
Bool forceFill= False;
if (itsPtrIndex.nelements() == 0) {
itsFile->open();
readHeader();
forceFill=True;
}
// Set cache size to persistent cache size if not set explicitly yet.
if (itsCacheSize == 0) {
itsCacheSize = itsPersCacheSize;
}
itsCache = new BucketCache (itsFile, 512, itsBucketSize,
itsNrBuckets, itsCacheSize,
this,
SSMBase::readCallBack,
SSMBase::writeCallBack,
SSMBase::initCallBack,
SSMBase::deleteCallBack);
itsCache->resync (itsNrBuckets, itsFreeBucketsNr,
itsFirstFreeBucket);
if (forceFill) {
readIndexBuckets();
}
}
}
uInt SSMBase::getRowsPerBucket(uInt aColumn) const
{
return itsPtrIndex[itsColIndexMap[aColumn]]->getRowsPerBucket();
}
uInt SSMBase::getNewBucket()
{
char* aBucketPtr = new char[itsBucketSize];
memset (aBucketPtr,0,itsBucketSize);
// Get a new bucket number from bucketcache
return getCache().addBucket(aBucketPtr);
}
void SSMBase::readHeader()
{
// Set at start of file.
itsFile->seek(0);
// Use the file given by the BucketFile object
// Use a buffer size (512) equal to start of buckets in the file,
// so the IO buffers in the different objects do not overlap.
CountedPtr<ByteIO> aFio = itsFile->makeFilebufIO (512);
// It is stored in big or little endian canonical format.
TypeIO* aTio;
if (asBigEndian()) {
aTio = new CanonicalIO (aFio.get());
} else {
aTio = new LECanonicalIO (aFio.get());
}
AipsIO anOs (aTio);
uInt version = anOs.getstart("StandardStMan");
itsBucketRows = 0;
itsIdxBucketOffset = 0;
Bool bigEndian = True;
if (version >= 3) {
anOs >> bigEndian;
}
if (bigEndian != asBigEndian()) {
throw DataManError("Endian flag in SSM mismatches the table flag");
}
anOs >> itsBucketSize; // Size of the bucket
anOs >> itsNrBuckets; // Initial Nr of Buckets
anOs >> itsPersCacheSize; // Size of Persistent cache
anOs >> itsFreeBucketsNr; // Nr of Free Buckets
anOs >> itsFirstFreeBucket; // First Free Bucket nr
anOs >> itsNrIdxBuckets; // Nr of Buckets needed 4 Index
anOs >> itsFirstIdxBucket; // First indexBucket Number
if (version >= 2) {
anOs >> itsIdxBucketOffset;
}
anOs >> itsLastStringBucket; // Last StringBucket in use
anOs >> itsIndexLength; // length of index
uInt nrinx;
anOs >> nrinx; // Nr of indices
if (itsStringHandler == 0) {
itsStringHandler = new SSMStringHandler(this);
itsStringHandler->init();
}
itsStringHandler->setLastStringBucket(itsLastStringBucket);
anOs.getend();
anOs.close();
delete aTio;
for (uInt i=0; i<itsPtrIndex.nelements(); i++) {
delete itsPtrIndex[i];
}
itsPtrIndex.resize (nrinx, True, False);
itsPtrIndex = 0;
}
void SSMBase::readIndexBuckets()
{
TypeIO* aMio;
MemoryIO aMemBuf(itsIndexLength);
uInt aCLength = 2*CanonicalConversion::canonicalSize (&itsFirstIdxBucket);
getCache();
// It is stored in big or little endian canonical format.
if (asBigEndian()) {
aMio = new CanonicalIO (&aMemBuf);
} else {
aMio = new LECanonicalIO (&aMemBuf);
}
AipsIO anMOs (aMio);
Int aBucket = itsFirstIdxBucket;
Int idxBucketSize = itsBucketSize - aCLength;
Int aNr = itsIndexLength;
char* aBucketPtr;
for (uInt j=0; j< itsNrIdxBuckets; j++) {
aBucketPtr = getBucket(aBucket);
// First aCLength/2 bytes should be identical to next aCLength/2 bytes.
// If not it might be an indicator that something went wrong
// This can be used in the future
Int aCheckNr;
CanonicalConversion::toLocal (aCheckNr,aBucketPtr);
CanonicalConversion::toLocal (aBucket,aBucketPtr+aCLength/2);
if (aCheckNr != aBucket) {
// Not used for now
}
// If offset is given, index fits in this single bucket from offset on.
if (itsIdxBucketOffset > 0) {
AlwaysAssert (itsIdxBucketOffset+itsIndexLength <= itsBucketSize
&& itsNrIdxBuckets == 1,
AipsError);
aMemBuf.write (aNr, aBucketPtr+itsIdxBucketOffset);
} else if (aNr < idxBucketSize) {
aMemBuf.write (aNr, aBucketPtr+aCLength);
} else {
aMemBuf.write (idxBucketSize, aBucketPtr+aCLength);
}
aNr-=idxBucketSize;
}
aMemBuf.seek(0);
uInt aNrIdx=itsPtrIndex.nelements();
for (uInt i=0; i < aNrIdx; i++) {
itsPtrIndex[i] = new SSMIndex(this);
itsPtrIndex[i]->get(anMOs);
}
anMOs.close();
delete aMio;
}
void SSMBase::writeIndex()
{
TypeIO* aTio;
TypeIO* aMio;
MemoryIO aMemBuf;
// Use the file given by the BucketFile object..
// Use a buffer size (512) equal to start of buckets in the file,
// so the IO buffers in the different objects do not overlap.
CountedPtr<ByteIO> aFio = itsFile->makeFilebufIO (512);
uInt aCLength = 2*CanonicalConversion::canonicalSize(&itsFirstIdxBucket);
// Store it in big or little endian canonical format.
if (asBigEndian()) {
aMio = new CanonicalIO (&aMemBuf);
aTio = new CanonicalIO (aFio.get());
} else {
aMio = new LECanonicalIO (&aMemBuf);
aTio = new LECanonicalIO (aFio.get());
}
AipsIO anMOs (aMio);
uInt aNrIdx = itsPtrIndex.nelements();
for (uInt i=0;i<aNrIdx; i++ ){
itsPtrIndex[i]->put(anMOs);
}
anMOs.close();
// Write total Mio in buckets.
// Leave space for next bucket nr.
const uChar* aMemPtr = aMemBuf.getBuffer();
uInt idxLength = aMemBuf.length();
uInt idxBucketSize = itsBucketSize-aCLength;
uInt aNrBuckets = idxLength / idxBucketSize;
uInt aRestSize = idxLength % idxBucketSize;
if (aRestSize != 0) {
aNrBuckets++;
} else {
aRestSize = idxBucketSize;
}
// If index is currently written in a single half of a bucket,
// see if this fits in the other half.
if (itsIdxBucketOffset > 0 && idxLength <= idxBucketSize/2) {
if (itsIdxBucketOffset == aCLength) {
itsIdxBucketOffset += idxBucketSize/2;
} else {
itsIdxBucketOffset = aCLength;
}
char* aBucketPtr = getBucket (itsFirstIdxBucket);
memcpy (aBucketPtr+itsIdxBucketOffset, aMemPtr, idxLength);
setBucketDirty();
} else {
// One or more new buckets are needed to store the index.
Int aNewBucket = -1;
Int anOldBucket = -1;
for (uInt i=aNrBuckets; i>0; i--) {
aNewBucket = getNewBucket();
char* aBucketPtr = getBucket(aNewBucket);
// Writing is done from the end to be able to fill in immediately
// the nr of the next bucket (held in anOldBucket).
CanonicalConversion::fromLocal (aBucketPtr, anOldBucket);
CanonicalConversion::fromLocal (aBucketPtr+aCLength/2, anOldBucket);
// Write rest of index as far as it fits.
memcpy (aBucketPtr+aCLength, aMemPtr+((i-1)*idxBucketSize), aRestSize);
setBucketDirty();
aRestSize = idxBucketSize;
anOldBucket = aNewBucket;
}
// New Index is written, give old indexbuckets free, and save firstBucketNr
Int aBucket = itsFirstIdxBucket;
while (aBucket != -1) {
char* aBucketPtr = getBucket(aBucket);
CanonicalConversion::toLocal (aBucket, aBucketPtr+aCLength/2);
itsCache->removeBucket();
}
itsFirstIdxBucket = aNewBucket;
// If the index fits in half a bucket, we might be able to use the other
// half when writing the index the next time.
// Set the index offset variable accordingly.
if (idxLength <= idxBucketSize/2) {
itsIdxBucketOffset = aCLength;
} else {
itsIdxBucketOffset = 0;
}
}
itsNrIdxBuckets = aNrBuckets;
delete aMio;
AlwaysAssert ( itsStringHandler != 0, AipsError);
itsLastStringBucket = itsStringHandler->lastStringBucket();
itsStringHandler->flush();
itsCache->flush();
aNrBuckets = getCache().nBucket();
itsFile->seek (0);
AipsIO anOs (aTio);
// Write a few items at the beginning of the file AipsIO anOs (aTio);
// The endian switch is a new feature. So only put it if little endian
// is used. In that way older software can read newer tables.
if (asBigEndian()) {
anOs.putstart("StandardStMan", 2);
} else {
anOs.putstart("StandardStMan", 3);
anOs << asBigEndian();
}
anOs << itsBucketSize; // Size of the bucket
anOs << aNrBuckets; // Present number of buckets
anOs << itsPersCacheSize; // Size of Persistent cache
anOs << getCache().nFreeBucket(); // Nr of Free Buckets
anOs << getCache().firstFreeBucket(); // First Free Bucket nr
anOs << itsNrIdxBuckets; // Nr buckets needed for index
anOs << itsFirstIdxBucket; // First Index bucket number
anOs << itsIdxBucketOffset; // Offset of bucket if fitting
anOs << itsLastStringBucket; // Last String bucket in use
anOs << idxLength; // length of index
anOs << uInt(itsPtrIndex.nelements());// Nr of indices
anOs.putend();
anOs.close();
delete aTio;
aFio->flush();
// Synchronize to make sure it gets written to disk.
// This is needed for NFS-files under Linux (to resolve defect 2752).
itsFile->fsync();
}
void SSMBase::setBucketDirty()
{
itsCache->setDirty();
isDataChanged = True;
}
//# The storage manager can add rows.
Bool SSMBase::canAddRow() const
{
return True;
}
//# The storage manager can delete rows.
Bool SSMBase::canRemoveRow() const
{
return True;
}
//# The storage manager cannot add columns (not yet).
Bool SSMBase::canAddColumn() const
{
return True;
}
//# The storage manager cannot delete columns (not yet).
Bool SSMBase::canRemoveColumn() const
{
return True;
}
void SSMBase::addRow64 (rownr_t aNrRows)
{
//make sure cache is available and filled (I need itsPtrIndex)
getCache();
uInt aNrIdx = itsPtrIndex.nelements();
for (uInt i=0; i< aNrIdx; i++) {
itsPtrIndex[i]->addRow(aNrRows);
}
uInt aNrCol = ncolumn();
for (uInt j=0; j< aNrCol; j++) {
itsPtrColumn[j]->addRow(itsNrRows+aNrRows,itsNrRows,False);
}
itsNrRows+=aNrRows;
isDataChanged = True;
}
void SSMBase::removeRow64 (rownr_t aRowNr)
{
uInt aNrCol = ncolumn();
for (uInt j=0; j< aNrCol; j++) {
itsPtrColumn[j]->deleteRow(aRowNr);
}
uInt aNrIdx=itsPtrIndex.nelements();
for (uInt i=0; i< aNrIdx; i++) {
Int anEmptyBucket=itsPtrIndex[i]->deleteRow(aRowNr);
// remove bucket if empty;
if (anEmptyBucket >= 0) {
removeBucket(anEmptyBucket);
}
}
itsNrRows--;
if (itsNrRows == 0) {
for (uInt i=0; i<itsPtrIndex.nelements(); i++) {
delete itsPtrIndex[i];
}
Int aBucket = itsFirstIdxBucket;
uInt aCLength = 2*CanonicalConversion::canonicalSize(&itsFirstIdxBucket);
while (aBucket != -1) {
char* aBucketPtr=getBucket(aBucket);
CanonicalConversion::toLocal (aBucket, aBucketPtr+aCLength/2);
itsCache->removeBucket();
}
itsFirstIdxBucket = -1;
itsIdxBucketOffset = 0;
itsNrIdxBuckets = 0;
create64(itsNrRows);
// recreate();
}
isDataChanged = True;
}
void SSMBase::addColumn (DataManagerColumn* aColumn)
{
// Be sure cache is filled
getCache();
SSMColumn* aSSMC = dynamic_cast<SSMColumn*> (aColumn);
AlwaysAssert ( aSSMC != 0, AipsError);
aSSMC->doCreate(0);
Int aSearchLength = aSSMC->getExternalSizeBits();
Int anOffset=-1;
Int aBestFit=-1;
uInt saveIndex=0;
Int saveOffset=-1;
// Try if there is freespace available where this column can fit (best fit)
// For now we assume that a best fit will be :
// 1) exact fit
// 2) any fit
for (uInt i=0; i<itsPtrIndex.nelements() &&
aBestFit != aSearchLength; i++) {
Int aFoundFit =itsPtrIndex[i]->getFree(anOffset,aSearchLength);
if (aFoundFit == 0) {
// Perfect Fit Found
aBestFit = aSearchLength;
saveIndex=i;
saveOffset=anOffset;
} else if (aFoundFit > 0) {
if (aFoundFit < aBestFit || aBestFit == -1) {
aBestFit = aFoundFit;
saveIndex=i;
saveOffset=anOffset;
}
}
}
// If fit found use this space, else make new column
uInt nCol = aSSMC->getColNr();
itsColumnOffset.resize(ncolumn(),True);
itsColIndexMap.resize(ncolumn(),True);
if (aBestFit != -1) {
itsPtrIndex[saveIndex]->addColumn(saveOffset,aSearchLength);
itsColIndexMap[nCol]=saveIndex;
itsColumnOffset[nCol]=saveOffset;
} else {
// calculate rowsperbucket for new index
AlwaysAssert (aSearchLength != 0, AipsError);
uInt rowsPerBucket = itsBucketSize*8 / aSearchLength;
if (rowsPerBucket < 1) {
// The BucketSize is too small to contain data.
throw DataManError ("StandardStMan::addColumn bucketsize too small"
" for adding column " + aColumn->columnName());
}
uInt nrIdx=itsPtrIndex.nelements();
itsPtrIndex.resize(nrIdx+1,True);
itsPtrIndex[nrIdx] = new SSMIndex(this,rowsPerBucket);
uInt aSize =(rowsPerBucket*aSSMC->getExternalSizeBits() + 7) / 8;
itsPtrIndex[nrIdx]->setNrColumns(1,aSize);
itsPtrIndex[nrIdx]->addRow(itsNrRows);
itsColIndexMap[nCol]=nrIdx;
itsColumnOffset[nCol]=0;
}
aSSMC->addRow(itsNrRows,0,aBestFit != -1);
isDataChanged = True;
}
void SSMBase::removeBucket (uInt aBucketNr)
{
getCache().getBucket(aBucketNr);
getCache().removeBucket();
}
char* SSMBase::getBucket (uInt aBucketNr)
{
return itsCache->getBucket(aBucketNr);
}
void SSMBase::removeColumn (DataManagerColumn* aColumn)
{
getCache();
SSMColumn* aSSMC = dynamic_cast<SSMColumn*> (aColumn);
AlwaysAssert ( aSSMC != 0, AipsError);
uInt aNrCol = ncolumn();
uInt aColNr = aSSMC->getColNr();
Bool isFound=False;
for (uInt i=0; i<aNrCol && !isFound ; i++) {
if (itsPtrColumn[i]->getColNr() == aColNr) {
isFound=True;
itsPtrColumn[i]->removeColumn();
// free up space
Int aNrColumns = itsPtrIndex[itsColIndexMap[i]]->removeColumn
(itsColumnOffset[i], itsPtrColumn[i]->getExternalSizeBits());
// if no columns left,buckets can be released
if (aNrColumns == 0) {
Vector<uInt> aBucketList=itsPtrIndex[itsColIndexMap[i]]->getBuckets();
for (uInt k=0; k<aBucketList.nelements(); k++) {
removeBucket(aBucketList(k));
}
delete itsPtrIndex[itsColIndexMap[i]];
itsPtrIndex.remove(itsColIndexMap[i],True);
// because there's one ptrindex less, the colindexmap ptr's with
// a value > then i should be 1 less.
for (uInt k=0; k<aNrCol; k++) {
if (itsColIndexMap[k] > itsColIndexMap[i]) {
itsColIndexMap[k] = itsColIndexMap[k]-1;
}
}
}
delete itsPtrColumn[i];
for (uInt j=i;j<aNrCol-1;j++) {
// move columns right of removed on to the left in the PtrList
itsPtrColumn[j] = itsPtrColumn[j+1];
// decrement the columnnumber by 1
itsPtrColumn[j]->setColNr(itsPtrColumn[j]->getColNr()-1);
// move the offsets of the remaining columns to the left also
itsColumnOffset[j] = itsColumnOffset[j+1];
itsColIndexMap[j] = itsColIndexMap[j+1];
itsPtrColumn[j] = itsPtrColumn[j+1];
}
decrementNcolumn();
isDataChanged = True;
}
}
}
char* SSMBase::readCallBack (void* anOwner, const char* aBucketStorage)
{
uInt aSize = static_cast<SSMBase*>(anOwner)->getBucketSize();
char* aBucket = new char [aSize];
memcpy (aBucket, aBucketStorage, aSize);
return aBucket;
}
void SSMBase::writeCallBack (void* anOwner, char* aBucketStorage,
const char* aBucket)
{
uInt aSize = static_cast<SSMBase*>(anOwner)->getBucketSize();
memcpy (aBucketStorage, aBucket, aSize);
}
void SSMBase::deleteCallBack (void*, char* aBucket)
{
delete [] aBucket;
}
char* SSMBase::initCallBack (void* anOwner)
{
uInt aSize = static_cast<SSMBase*>(anOwner)->getBucketSize();
char* aBucket = new char [aSize];
memset (aBucket,0,aSize);
return aBucket;
}
char* SSMBase::find(rownr_t aRowNr, uInt aColNr,
rownr_t& aStartRow, rownr_t& anEndRow,
const String& colName)
{
// Make sure that cache is available and filled.
getCache();
SSMIndex* anIndexPtr = itsPtrIndex[itsColIndexMap[aColNr]];
uInt aBucketNr;
anIndexPtr->find(aRowNr,aBucketNr,aStartRow,anEndRow, colName);
char* aPtr = getBucket(aBucketNr);
return aPtr + itsColumnOffset[aColNr];
}
void SSMBase::recreate()
{
delete itsCache;
itsCache = 0;
delete itsFile;
itsFile = 0;
delete itsIosFile;
itsIosFile = 0;
delete itsStringHandler;
itsStringHandler = 0;
itsNrBuckets = 0;
itsFirstIdxBucket = -1;
itsFreeBucketsNr = 0;
itsFirstFreeBucket = -1;
itsFile = new BucketFile (fileName(), 0, False, multiFile());
makeCache();
// Let the Index recreate itself when needed
uInt aNrIdx=itsPtrIndex.nelements();
for (uInt i=0; i<aNrIdx; i++) {
itsPtrIndex[i]->recreate();
}
itsStringHandler = new SSMStringHandler(this);
itsStringHandler->init();
// Let the column objects create something (if needed)
uInt aNrCol = ncolumn();
for (uInt i=0; i<aNrCol; i++) {
itsPtrColumn[i]->doCreate(itsNrRows);
}
isDataChanged = True;
}
Bool SSMBase::hasMultiFileSupport() const
{ return True; }
Bool SSMBase::flush (AipsIO& ios, Bool doFsync)
{
//# Check if anything has changed.
Bool changed = False;
if (itsStringHandler) {
itsStringHandler->flush();
}
if (itsCache != 0) {
itsCache->flush();
}
if (isDataChanged) {
writeIndex();
if (doFsync) {
itsFile->fsync();
}
changed = True;
isDataChanged = False;
}
if (itsIosFile != 0) {
itsIosFile->flush(doFsync);
}
ios.putstart ("SSM", 2);
ios << itsDataManName;
putBlock (ios, itsColumnOffset, itsColumnOffset.nelements());
putBlock (ios, itsColIndexMap, itsColIndexMap.nelements());
ios.putend();
return changed;
}
rownr_t SSMBase::resync64 (rownr_t aNrRows)
{
itsNrRows = aNrRows;
if (itsPtrIndex.nelements() != 0) {
readHeader();
}
if (itsCache != 0) {
itsCache->resync (itsNrBuckets, itsFreeBucketsNr,
itsFirstFreeBucket);
}
if (itsPtrIndex.nelements() != 0) {
readIndexBuckets();
}
if (itsStringHandler != 0) {
itsStringHandler->resync();
}
uInt aNrCol = ncolumn();
if (itsIosFile != 0) {
itsIosFile->resync();
}
for (uInt i=0; i<aNrCol; i++) {
itsPtrColumn[i]->resync (itsNrRows);
}
return itsNrRows;
}
void SSMBase::create64 (rownr_t aNrRows)
{
init();
recreate();
itsNrRows = 0;
addRow64 (aNrRows);
}
rownr_t SSMBase::open64 (rownr_t aRowNr, AipsIO& ios)
{
itsNrRows = aRowNr;
ios.getstart ("SSM");
ios >> itsDataManName;
getBlock (ios,itsColumnOffset);
getBlock (ios,itsColIndexMap);
ios.getend();
itsFile = new BucketFile (fileName(), table().isWritable(),
0, False, multiFile());
AlwaysAssert (itsFile != 0, AipsError);
// Let the column object initialize themselves (if needed)
uInt aNrCol = ncolumn();
for (uInt i=0; i<aNrCol; i++) {
itsPtrColumn[i]->getFile(itsNrRows);
}
return itsNrRows;
}
StManArrayFile* SSMBase::openArrayFile (ByteIO::OpenOption anOpt)
{
if (itsIosFile == 0) {
itsIosFile = new StManArrayFile (fileName() + 'i', anOpt,
0, asBigEndian(), 0, multiFile());
}
return itsIosFile;
}
void SSMBase::reopenRW()
{
if (itsFile != 0) {
itsFile->setRW();
}
if (itsIosFile != 0) {
itsIosFile->reopenRW();
}
}
void SSMBase::deleteManager()
{
delete itsIosFile;
itsIosFile = 0;
// Clear cache without flushing.
if (itsCache != 0) {
itsCache->clear (0, False);
}
if (itsFile != 0) {
itsFile->remove();
delete itsFile;
itsFile = 0;
}
}
void SSMBase::init()
{
// Size the blocks as needed.
uInt nrCol = ncolumn();
itsColumnOffset.resize (nrCol, True);
itsColIndexMap.resize (nrCol, True);
itsColIndexMap = 0;
// Set the bucket size and get nr of rows per bucket.
// If an advised nr of rows per bucket was given and the actual
// nr is smaller, adjust it to fill up the last bucket.
uInt rowsPerBucket = setBucketSize();
if (itsBucketRows > 0 && itsBucketRows > rowsPerBucket) {
uInt nbuckets = (itsBucketRows + rowsPerBucket - 1) / rowsPerBucket;
itsBucketRows = (itsBucketRows + nbuckets - 1) / nbuckets;
rowsPerBucket = setBucketSize();
}
// Determine the offset of each column.
// Note that the data of a column are consecutive per bucket.
uInt aTotalSize = 0;
for (uInt i=0; i<nrCol; i++) {
itsColumnOffset[i] = aTotalSize;
aTotalSize += (rowsPerBucket *
itsPtrColumn[i]->getExternalSizeBits() + 7) / 8;
}
// All columns are in the same bucket list, thus only one SSMIndex needed.
itsPtrIndex.resize (1, True);
itsPtrIndex[0] = new SSMIndex(this, rowsPerBucket);
itsPtrIndex[0]->setNrColumns (nrCol, aTotalSize);
}
uInt SSMBase::setBucketSize()
{
// Find nr of columns and possibly advised nr of rows per bucket.
uInt nrCol = ncolumn();
uInt advBucketRows = itsBucketRows;
// Finding the nr of rows fitting in the bucket is a bit hard, because
// Bool values are stored as bits. Therefore we have to iterate.
// First find the nr of full bytes needed (ignoring possible remainders).
uInt aTotalSize = 0;
for (uInt i=0; i<nrCol; i++) {
aTotalSize += itsPtrColumn[i]->getExternalSizeBytes();
}
// Get first guess for nr of rows per bucket.
if (itsBucketSize < 128) {
itsBucketSize = 128;
}
uInt rowsPerBucket = advBucketRows;
if (advBucketRows == 0) {
if (itsBucketSize < 128) {
itsBucketSize = 128;
}
rowsPerBucket = itsBucketSize/aTotalSize;
}
// Now refine it by determining how big bucket is when using one more row.
while (True) {
uInt aThisSize = 0;
uInt aNextSize = 0;
for (uInt i=0; i<nrCol; i++) {
aThisSize += (rowsPerBucket *
itsPtrColumn[i]->getExternalSizeBits() + 7) / 8;
aNextSize += ((rowsPerBucket+1) *
itsPtrColumn[i]->getExternalSizeBits() + 7) / 8;
}
// If advised #rows/bucket given, get bucket size.
if (advBucketRows > 0) {
itsBucketSize = min (32768u, max(128u, aThisSize));
if (itsBucketSize == aThisSize) {
break;
}
// Exceeding minimum or maximum, so calculate #rows/bucket.
rowsPerBucket = itsBucketSize/aTotalSize;
advBucketRows = 0;
} else {
// Stop if one more row does not fit.
if (aNextSize > itsBucketSize) {
break;
}
rowsPerBucket++;
}
}
if (rowsPerBucket < 1) {
// The bucket size is too small to contain all columns, so adjust it.
itsBucketSize = aTotalSize;
rowsPerBucket = 1;
}
AlwaysAssert (itsBucketSize >= 128, AipsError);
return rowsPerBucket;
}
} //# NAMESPACE CASACORE - END
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